Hb_000580_110

Information

Type -
Description -
Location Contig580: 57162-58487
Sequence    

Annotation

kegg
ID tcc:TCM_005530
description UDP-D-glucuronate 4-epimerase 3
nr
ID XP_012083592.1
description PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
swissprot
ID O81312
description UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana GN=GAE3 PE=2 SV=1
trembl
ID A0A067JY29
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14538 PE=4 SV=1
Gene Ontology
ID GO:0016021
description udp-glucuronate 4-epimerase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49841: 56809-58792
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000580_110 0.0 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
2 Hb_000236_180 0.0661777294 - - serine hydroxymethyltransferase, putative [Ricinus communis]
3 Hb_000417_380 0.0902681201 - - SecY protein transport family protein [Theobroma cacao]
4 Hb_002495_030 0.1101858011 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]
5 Hb_000077_310 0.1148721865 - - PREDICTED: clathrin light chain 1 [Jatropha curcas]
6 Hb_001195_380 0.1156179158 - - PREDICTED: uncharacterized protein LOC105633781 [Jatropha curcas]
7 Hb_001493_060 0.1158474449 - - PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]
8 Hb_000077_100 0.12340778 - - PREDICTED: mannan endo-1,4-beta-mannosidase 2-like isoform X1 [Jatropha curcas]
9 Hb_003470_110 0.124270605 - - unnamed protein product [Vitis vinifera]
10 Hb_029223_040 0.1268441073 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
11 Hb_036388_010 0.1277100938 - - PREDICTED: formate--tetrahydrofolate ligase [Populus euphratica]
12 Hb_006615_230 0.1339796968 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
13 Hb_098795_030 0.134479159 - - PREDICTED: metal tolerance protein 1-like [Vitis vinifera]
14 Hb_000808_150 0.1360251522 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
15 Hb_030565_100 0.1374312805 - - serine hydroxymethyltransferase, putative [Ricinus communis]
16 Hb_001195_090 0.1382985596 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
17 Hb_003783_050 0.1388462273 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002596_080 0.1408883658 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g04160 [Jatropha curcas]
19 Hb_000941_120 0.1432738974 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
20 Hb_005976_010 0.1437429641 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000580_110 Hb_000580_110 Hb_000236_180 Hb_000236_180 Hb_000580_110--Hb_000236_180 Hb_000417_380 Hb_000417_380 Hb_000580_110--Hb_000417_380 Hb_002495_030 Hb_002495_030 Hb_000580_110--Hb_002495_030 Hb_000077_310 Hb_000077_310 Hb_000580_110--Hb_000077_310 Hb_001195_380 Hb_001195_380 Hb_000580_110--Hb_001195_380 Hb_001493_060 Hb_001493_060 Hb_000580_110--Hb_001493_060 Hb_003470_110 Hb_003470_110 Hb_000236_180--Hb_003470_110 Hb_030565_100 Hb_030565_100 Hb_000236_180--Hb_030565_100 Hb_000236_180--Hb_000417_380 Hb_006615_230 Hb_006615_230 Hb_000236_180--Hb_006615_230 Hb_000077_100 Hb_000077_100 Hb_000236_180--Hb_000077_100 Hb_036388_010 Hb_036388_010 Hb_000417_380--Hb_036388_010 Hb_189003_070 Hb_189003_070 Hb_000417_380--Hb_189003_070 Hb_000417_380--Hb_000077_310 Hb_003783_050 Hb_003783_050 Hb_000417_380--Hb_003783_050 Hb_098795_030 Hb_098795_030 Hb_002495_030--Hb_098795_030 Hb_002495_030--Hb_006615_230 Hb_001008_080 Hb_001008_080 Hb_002495_030--Hb_001008_080 Hb_003052_080 Hb_003052_080 Hb_002495_030--Hb_003052_080 Hb_007590_100 Hb_007590_100 Hb_002495_030--Hb_007590_100 Hb_000808_150 Hb_000808_150 Hb_000077_310--Hb_000808_150 Hb_000139_300 Hb_000139_300 Hb_000077_310--Hb_000139_300 Hb_000107_350 Hb_000107_350 Hb_000077_310--Hb_000107_350 Hb_003226_250 Hb_003226_250 Hb_000077_310--Hb_003226_250 Hb_006750_010 Hb_006750_010 Hb_001195_380--Hb_006750_010 Hb_000251_120 Hb_000251_120 Hb_001195_380--Hb_000251_120 Hb_001195_380--Hb_001008_080 Hb_001195_380--Hb_002495_030 Hb_002596_080 Hb_002596_080 Hb_001195_380--Hb_002596_080 Hb_002164_020 Hb_002164_020 Hb_001493_060--Hb_002164_020 Hb_000347_190 Hb_000347_190 Hb_001493_060--Hb_000347_190 Hb_001493_060--Hb_002596_080 Hb_009079_050 Hb_009079_050 Hb_001493_060--Hb_009079_050 Hb_001195_090 Hb_001195_090 Hb_001493_060--Hb_001195_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.50269 4.73647 8.47478 41.6626 1.79925 1.72796
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.8742 3.09052 2.96791 11.1343 30.7909

CAGE analysis