Hb_002495_030

Information

Type -
Description -
Location Contig2495: 37761-46418
Sequence    

Annotation

kegg
ID rcu:RCOM_0091430
description ATP binding protein, putative (EC:2.7.11.1)
nr
ID XP_012073015.1
description PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]
swissprot
ID Q9LT35
description Serine/threonine-protein kinase Nek6 OS=Arabidopsis thaliana GN=NEK6 PE=3 SV=1
trembl
ID A0A067KZS6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06808 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase nek6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25925: 37885-40166 , PASA_asmbl_25926: 37885-40473
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002495_030 0.0 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]
2 Hb_098795_030 0.0984295122 - - PREDICTED: metal tolerance protein 1-like [Vitis vinifera]
3 Hb_006615_230 0.1045649853 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
4 Hb_000580_110 0.1101858011 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
5 Hb_001008_080 0.111772257 - - PREDICTED: acyl-protein thioesterase 2 [Jatropha curcas]
6 Hb_003052_080 0.1126641233 desease resistance Gene Name: PRK PREDICTED: uridine-cytidine kinase C [Jatropha curcas]
7 Hb_007590_100 0.1151995396 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
8 Hb_189003_070 0.1185619549 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
9 Hb_002750_040 0.1222811363 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
10 Hb_002685_220 0.123633244 - - PREDICTED: cationic amino acid transporter 4, vacuolar-like isoform X1 [Jatropha curcas]
11 Hb_000417_380 0.1272177675 - - SecY protein transport family protein [Theobroma cacao]
12 Hb_000236_180 0.1292096952 - - serine hydroxymethyltransferase, putative [Ricinus communis]
13 Hb_001195_380 0.1327368857 - - PREDICTED: uncharacterized protein LOC105633781 [Jatropha curcas]
14 Hb_020378_020 0.1359884237 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
15 Hb_002097_080 0.1367520845 - - phosphatidylinositol-4-phosphate 5-kinase, putative [Ricinus communis]
16 Hb_010222_040 0.13843163 - - PREDICTED: kinesin-2 [Jatropha curcas]
17 Hb_113766_010 0.1388598271 - - plasma membrane H+ ATPase, partial [Nicotiana plumbaginifolia]
18 Hb_000333_030 0.1388994184 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
19 Hb_036388_010 0.1397329096 - - PREDICTED: formate--tetrahydrofolate ligase [Populus euphratica]
20 Hb_001404_070 0.1405242997 - - sucrose synthase 4 [Hevea brasiliensis]

Gene co-expression network

sample Hb_002495_030 Hb_002495_030 Hb_098795_030 Hb_098795_030 Hb_002495_030--Hb_098795_030 Hb_006615_230 Hb_006615_230 Hb_002495_030--Hb_006615_230 Hb_000580_110 Hb_000580_110 Hb_002495_030--Hb_000580_110 Hb_001008_080 Hb_001008_080 Hb_002495_030--Hb_001008_080 Hb_003052_080 Hb_003052_080 Hb_002495_030--Hb_003052_080 Hb_007590_100 Hb_007590_100 Hb_002495_030--Hb_007590_100 Hb_098795_030--Hb_006615_230 Hb_003470_110 Hb_003470_110 Hb_098795_030--Hb_003470_110 Hb_002097_080 Hb_002097_080 Hb_098795_030--Hb_002097_080 Hb_001976_020 Hb_001976_020 Hb_098795_030--Hb_001976_020 Hb_002685_220 Hb_002685_220 Hb_098795_030--Hb_002685_220 Hb_134014_010 Hb_134014_010 Hb_006615_230--Hb_134014_010 Hb_189003_070 Hb_189003_070 Hb_006615_230--Hb_189003_070 Hb_001119_070 Hb_001119_070 Hb_006615_230--Hb_001119_070 Hb_158092_040 Hb_158092_040 Hb_006615_230--Hb_158092_040 Hb_000236_180 Hb_000236_180 Hb_000580_110--Hb_000236_180 Hb_000417_380 Hb_000417_380 Hb_000580_110--Hb_000417_380 Hb_000077_310 Hb_000077_310 Hb_000580_110--Hb_000077_310 Hb_001195_380 Hb_001195_380 Hb_000580_110--Hb_001195_380 Hb_001493_060 Hb_001493_060 Hb_000580_110--Hb_001493_060 Hb_000003_580 Hb_000003_580 Hb_001008_080--Hb_000003_580 Hb_006750_010 Hb_006750_010 Hb_001008_080--Hb_006750_010 Hb_020378_020 Hb_020378_020 Hb_001008_080--Hb_020378_020 Hb_001008_080--Hb_001195_380 Hb_003086_030 Hb_003086_030 Hb_001008_080--Hb_003086_030 Hb_004957_050 Hb_004957_050 Hb_003052_080--Hb_004957_050 Hb_000309_070 Hb_000309_070 Hb_003052_080--Hb_000309_070 Hb_001404_070 Hb_001404_070 Hb_003052_080--Hb_001404_070 Hb_003052_080--Hb_007590_100 Hb_002750_040 Hb_002750_040 Hb_003052_080--Hb_002750_040 Hb_007590_100--Hb_006615_230 Hb_187959_010 Hb_187959_010 Hb_007590_100--Hb_187959_010 Hb_004032_110 Hb_004032_110 Hb_007590_100--Hb_004032_110 Hb_007590_100--Hb_098795_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.36268 14.8501 19.8858 78.7312 2.2063 2.93649
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.2893 1.74329 2.29668 24.854 59.912

CAGE analysis