Hb_158092_040

Information

Type -
Description -
Location Contig158092: 23283-26970
Sequence    

Annotation

kegg
ID rcu:RCOM_1438460
description Transaldolase, putative (EC:2.2.1.2)
nr
ID XP_012088708.1
description PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
swissprot
ID Q829U5
description Transaldolase 2 OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680) GN=tal2 PE=3 SV=1
trembl
ID A0A067JTE6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23088 PE=3 SV=1
Gene Ontology
ID GO:0005739
description transaldolase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13914: 23388-26859
cDNA
(Sanger)
(ID:Location)		 012_F05.ab1: 24706-26681

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_158092_040 0.0 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
2 Hb_080477_080 0.0986275069 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 isoform X1 [Gossypium raimondii]
3 Hb_006615_230 0.1001450376 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
4 Hb_001119_070 0.1048199889 - - methylenetetrahydrofolate reductase, putative [Ricinus communis]
5 Hb_005333_080 0.1094542643 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004522_030 0.116156559 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 3 [Jatropha curcas]
7 Hb_134014_010 0.1244271633 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
8 Hb_189003_070 0.1257436298 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
9 Hb_005784_060 0.1302525624 - - PREDICTED: U-box domain-containing protein 28 [Jatropha curcas]
10 Hb_179960_010 0.1304216627 - - PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Jatropha curcas]
11 Hb_012760_090 0.1343751134 - - Aspartic proteinase-like protein 1 [Morus notabilis]
12 Hb_061222_010 0.1354558398 - - hypothetical protein RCOM_0012650 [Ricinus communis]
13 Hb_012395_050 0.1381030084 - - PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
14 Hb_010672_050 0.1390186846 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X3 [Jatropha curcas]
15 Hb_003470_110 0.1437682752 - - unnamed protein product [Vitis vinifera]
16 Hb_003710_020 0.1439164647 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
17 Hb_007590_100 0.1447718522 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
18 Hb_143766_080 0.1469010985 - - PREDICTED: uncharacterized protein LOC105637797 isoform X1 [Jatropha curcas]
19 Hb_001148_100 0.1477131132 - - -
20 Hb_031089_020 0.1478462269 - - Nodulation receptor kinase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_158092_040 Hb_158092_040 Hb_080477_080 Hb_080477_080 Hb_158092_040--Hb_080477_080 Hb_006615_230 Hb_006615_230 Hb_158092_040--Hb_006615_230 Hb_001119_070 Hb_001119_070 Hb_158092_040--Hb_001119_070 Hb_005333_080 Hb_005333_080 Hb_158092_040--Hb_005333_080 Hb_004522_030 Hb_004522_030 Hb_158092_040--Hb_004522_030 Hb_134014_010 Hb_134014_010 Hb_158092_040--Hb_134014_010 Hb_003710_020 Hb_003710_020 Hb_080477_080--Hb_003710_020 Hb_080477_080--Hb_004522_030 Hb_143766_080 Hb_143766_080 Hb_080477_080--Hb_143766_080 Hb_001054_090 Hb_001054_090 Hb_080477_080--Hb_001054_090 Hb_000062_530 Hb_000062_530 Hb_080477_080--Hb_000062_530 Hb_006615_230--Hb_134014_010 Hb_189003_070 Hb_189003_070 Hb_006615_230--Hb_189003_070 Hb_098795_030 Hb_098795_030 Hb_006615_230--Hb_098795_030 Hb_006615_230--Hb_001119_070 Hb_002495_030 Hb_002495_030 Hb_006615_230--Hb_002495_030 Hb_006351_020 Hb_006351_020 Hb_001119_070--Hb_006351_020 Hb_000806_130 Hb_000806_130 Hb_001119_070--Hb_000806_130 Hb_000696_070 Hb_000696_070 Hb_001119_070--Hb_000696_070 Hb_001119_070--Hb_189003_070 Hb_010672_050 Hb_010672_050 Hb_005333_080--Hb_010672_050 Hb_012760_090 Hb_012760_090 Hb_005333_080--Hb_012760_090 Hb_008695_150 Hb_008695_150 Hb_005333_080--Hb_008695_150 Hb_000116_240 Hb_000116_240 Hb_005333_080--Hb_000116_240 Hb_001019_160 Hb_001019_160 Hb_005333_080--Hb_001019_160 Hb_000928_120 Hb_000928_120 Hb_004522_030--Hb_000928_120 Hb_010050_020 Hb_010050_020 Hb_004522_030--Hb_010050_020 Hb_007537_030 Hb_007537_030 Hb_004522_030--Hb_007537_030 Hb_000622_330 Hb_000622_330 Hb_004522_030--Hb_000622_330 Hb_003001_130 Hb_003001_130 Hb_004522_030--Hb_003001_130 Hb_034507_060 Hb_034507_060 Hb_004522_030--Hb_034507_060 Hb_134014_010--Hb_189003_070 Hb_000959_130 Hb_000959_130 Hb_134014_010--Hb_000959_130 Hb_012395_050 Hb_012395_050 Hb_134014_010--Hb_012395_050 Hb_029223_040 Hb_029223_040 Hb_134014_010--Hb_029223_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.90462 29.1605 59.0331 160.97 5.1969 3.24184
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.31082 6.3015 12.6716 73.5409 55.3795

CAGE analysis