Hb_006615_230

Information

Type -
Description -
Location Contig6615: 145550-150051
Sequence    

Annotation

kegg
ID rcu:RCOM_1467120
description hypothetical protein
nr
ID XP_012080439.1
description PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
swissprot
ID Q8W486
description Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1
trembl
ID A0A067K8Q2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11769 PE=4 SV=1
Gene Ontology
ID GO:0016757
description o-fucosyltransferase family protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53050: 145792-150023
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006615_230 0.0 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
2 Hb_134014_010 0.0706301438 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
3 Hb_189003_070 0.0776442542 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
4 Hb_098795_030 0.0970083818 - - PREDICTED: metal tolerance protein 1-like [Vitis vinifera]
5 Hb_001119_070 0.0995900167 - - methylenetetrahydrofolate reductase, putative [Ricinus communis]
6 Hb_158092_040 0.1001450376 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
7 Hb_002495_030 0.1045649853 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]
8 Hb_000236_180 0.1072949039 - - serine hydroxymethyltransferase, putative [Ricinus communis]
9 Hb_003470_110 0.1107460023 - - unnamed protein product [Vitis vinifera]
10 Hb_000959_130 0.1122125703 - - organic anion transporter, putative [Ricinus communis]
11 Hb_007590_100 0.1137583477 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
12 Hb_004522_030 0.1161471509 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 3 [Jatropha curcas]
13 Hb_030565_100 0.1227880329 - - serine hydroxymethyltransferase, putative [Ricinus communis]
14 Hb_029223_040 0.1271981908 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
15 Hb_003001_130 0.1307316615 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000417_380 0.1324660197 - - SecY protein transport family protein [Theobroma cacao]
17 Hb_000580_110 0.1339796968 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
18 Hb_006570_090 0.1364253885 - - tubulin beta chain, putative [Ricinus communis]
19 Hb_001404_070 0.1373200232 - - sucrose synthase 4 [Hevea brasiliensis]
20 Hb_002097_080 0.1385546966 - - phosphatidylinositol-4-phosphate 5-kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_006615_230 Hb_006615_230 Hb_134014_010 Hb_134014_010 Hb_006615_230--Hb_134014_010 Hb_189003_070 Hb_189003_070 Hb_006615_230--Hb_189003_070 Hb_098795_030 Hb_098795_030 Hb_006615_230--Hb_098795_030 Hb_001119_070 Hb_001119_070 Hb_006615_230--Hb_001119_070 Hb_158092_040 Hb_158092_040 Hb_006615_230--Hb_158092_040 Hb_002495_030 Hb_002495_030 Hb_006615_230--Hb_002495_030 Hb_134014_010--Hb_189003_070 Hb_000959_130 Hb_000959_130 Hb_134014_010--Hb_000959_130 Hb_012395_050 Hb_012395_050 Hb_134014_010--Hb_012395_050 Hb_029223_040 Hb_029223_040 Hb_134014_010--Hb_029223_040 Hb_134014_010--Hb_158092_040 Hb_006736_050 Hb_006736_050 Hb_189003_070--Hb_006736_050 Hb_036388_010 Hb_036388_010 Hb_189003_070--Hb_036388_010 Hb_000417_380 Hb_000417_380 Hb_189003_070--Hb_000417_380 Hb_189003_070--Hb_001119_070 Hb_098795_030--Hb_002495_030 Hb_003470_110 Hb_003470_110 Hb_098795_030--Hb_003470_110 Hb_002097_080 Hb_002097_080 Hb_098795_030--Hb_002097_080 Hb_001976_020 Hb_001976_020 Hb_098795_030--Hb_001976_020 Hb_002685_220 Hb_002685_220 Hb_098795_030--Hb_002685_220 Hb_006351_020 Hb_006351_020 Hb_001119_070--Hb_006351_020 Hb_001119_070--Hb_158092_040 Hb_000806_130 Hb_000806_130 Hb_001119_070--Hb_000806_130 Hb_000696_070 Hb_000696_070 Hb_001119_070--Hb_000696_070 Hb_080477_080 Hb_080477_080 Hb_158092_040--Hb_080477_080 Hb_005333_080 Hb_005333_080 Hb_158092_040--Hb_005333_080 Hb_004522_030 Hb_004522_030 Hb_158092_040--Hb_004522_030 Hb_000580_110 Hb_000580_110 Hb_002495_030--Hb_000580_110 Hb_001008_080 Hb_001008_080 Hb_002495_030--Hb_001008_080 Hb_003052_080 Hb_003052_080 Hb_002495_030--Hb_003052_080 Hb_007590_100 Hb_007590_100 Hb_002495_030--Hb_007590_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.01244 6.12652 9.54582 31.1406 1.31493 0.91524
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.792558 0.942127 1.67102 10.1667 15.1891

CAGE analysis