Hb_004522_030

Information

Type -
Description -
Location Contig4522: 8324-11334
Sequence    

Annotation

kegg
ID rcu:RCOM_0876630
description 6-phosphogluconate dehydrogenase, putative (EC:1.1.1.44)
nr
ID XP_012088080.1
description PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 3 [Jatropha curcas]
swissprot
ID Q9FWA3
description 6-phosphogluconate dehydrogenase, decarboxylating 3 OS=Arabidopsis thaliana GN=At3g02360 PE=2 SV=1
trembl
ID A0A067JNE2
description 6-phosphogluconate dehydrogenase, decarboxylating OS=Jatropha curcas GN=JCGZ_25604 PE=3 SV=1
Gene Ontology
ID GO:0004616
description 6-phosphogluconate decarboxylating 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43214: 8146-11845 , PASA_asmbl_43215: 11393-11672
cDNA
(Sanger)
(ID:Location)		 023_A03.ab1: 9743-11845 , 041_E04.ab1: 9541-11776

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004522_030 0.0 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 3 [Jatropha curcas]
2 Hb_000928_120 0.0805919466 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
3 Hb_010050_020 0.0995613776 - - PREDICTED: uncharacterized protein LOC102601222 [Solanum tuberosum]
4 Hb_007537_030 0.1061071673 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
5 Hb_000622_330 0.1072523115 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
6 Hb_003001_130 0.1110869783 - - conserved hypothetical protein [Ricinus communis]
7 Hb_034507_060 0.1125544984 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic-like [Citrus sinensis]
8 Hb_012760_090 0.1144761449 - - Aspartic proteinase-like protein 1 [Morus notabilis]
9 Hb_003710_020 0.1158084249 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
10 Hb_006615_230 0.1161471509 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
11 Hb_158092_040 0.116156559 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
12 Hb_001545_130 0.117884838 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
13 Hb_001054_090 0.1183717924 - - Potassium channel SKOR, putative [Ricinus communis]
14 Hb_001119_070 0.1201614775 - - methylenetetrahydrofolate reductase, putative [Ricinus communis]
15 Hb_143766_080 0.1201689943 - - PREDICTED: uncharacterized protein LOC105637797 isoform X1 [Jatropha curcas]
16 Hb_000283_140 0.1217833988 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
17 Hb_147245_010 0.123893918 - - casein kinase, putative [Ricinus communis]
18 Hb_189003_070 0.1241188455 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
19 Hb_080477_080 0.1246747451 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 isoform X1 [Gossypium raimondii]
20 Hb_000570_020 0.1248314319 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004522_030 Hb_004522_030 Hb_000928_120 Hb_000928_120 Hb_004522_030--Hb_000928_120 Hb_010050_020 Hb_010050_020 Hb_004522_030--Hb_010050_020 Hb_007537_030 Hb_007537_030 Hb_004522_030--Hb_007537_030 Hb_000622_330 Hb_000622_330 Hb_004522_030--Hb_000622_330 Hb_003001_130 Hb_003001_130 Hb_004522_030--Hb_003001_130 Hb_034507_060 Hb_034507_060 Hb_004522_030--Hb_034507_060 Hb_000283_140 Hb_000283_140 Hb_000928_120--Hb_000283_140 Hb_000928_120--Hb_003001_130 Hb_000928_120--Hb_000622_330 Hb_000570_020 Hb_000570_020 Hb_000928_120--Hb_000570_020 Hb_000928_120--Hb_007537_030 Hb_012760_090 Hb_012760_090 Hb_010050_020--Hb_012760_090 Hb_001221_390 Hb_001221_390 Hb_010050_020--Hb_001221_390 Hb_010050_020--Hb_000622_330 Hb_002641_160 Hb_002641_160 Hb_010050_020--Hb_002641_160 Hb_000012_400 Hb_000012_400 Hb_010050_020--Hb_000012_400 Hb_007537_030--Hb_000570_020 Hb_000157_140 Hb_000157_140 Hb_007537_030--Hb_000157_140 Hb_004030_060 Hb_004030_060 Hb_007537_030--Hb_004030_060 Hb_018845_010 Hb_018845_010 Hb_007537_030--Hb_018845_010 Hb_021576_070 Hb_021576_070 Hb_007537_030--Hb_021576_070 Hb_004326_010 Hb_004326_010 Hb_007537_030--Hb_004326_010 Hb_006120_060 Hb_006120_060 Hb_000622_330--Hb_006120_060 Hb_002217_080 Hb_002217_080 Hb_000622_330--Hb_002217_080 Hb_000000_480 Hb_000000_480 Hb_000622_330--Hb_000000_480 Hb_000603_020 Hb_000603_020 Hb_003001_130--Hb_000603_020 Hb_003001_130--Hb_000283_140 Hb_004241_110 Hb_004241_110 Hb_003001_130--Hb_004241_110 Hb_000227_280 Hb_000227_280 Hb_003001_130--Hb_000227_280 Hb_000271_220 Hb_000271_220 Hb_003001_130--Hb_000271_220 Hb_023226_030 Hb_023226_030 Hb_034507_060--Hb_023226_030 Hb_034507_060--Hb_012760_090 Hb_005694_180 Hb_005694_180 Hb_034507_060--Hb_005694_180 Hb_003710_020 Hb_003710_020 Hb_034507_060--Hb_003710_020 Hb_004218_130 Hb_004218_130 Hb_034507_060--Hb_004218_130 Hb_034507_060--Hb_010050_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.0455 82.9416 103.604 245.08 12.0386 10.1678
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.8086 25.645 21.2727 101.166 113.955

CAGE analysis