Hb_003001_130

Information

Type -
Description -
Location Contig3001: 133908-135692
Sequence    

Annotation

kegg
ID rcu:RCOM_1750210
description hypothetical protein
nr
ID XP_002532747.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O74113
description Cell division control protein 45 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sna41 PE=1 SV=1
trembl
ID B9T3C8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1750210 PE=4 SV=1
Gene Ontology
ID GO:0005634
description cell division control protein 45 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31679: 133734-134260
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003001_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000603_020 0.0803444083 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
3 Hb_000928_120 0.0933221703 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
4 Hb_000283_140 0.1042199084 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
5 Hb_004241_110 0.1044024273 - - Minor allergen Alt a, putative [Ricinus communis]
6 Hb_000227_280 0.1067402434 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 [Jatropha curcas]
7 Hb_000271_220 0.108667181 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
8 Hb_003929_230 0.1093581805 - - PREDICTED: S-adenosylmethionine synthase 5 [Nelumbo nucifera]
9 Hb_004522_030 0.1110869783 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 3 [Jatropha curcas]
10 Hb_000109_190 0.1146360388 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
11 Hb_000622_330 0.1206549663 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
12 Hb_000028_430 0.1207852672 - - PREDICTED: uncharacterized protein LOC105641369 isoform X1 [Jatropha curcas]
13 Hb_003470_110 0.1243409369 - - unnamed protein product [Vitis vinifera]
14 Hb_084147_010 0.1252040412 - - amino acid transporter, putative [Ricinus communis]
15 Hb_000320_350 0.1257581114 - - hypothetical protein RCOM_0904330 [Ricinus communis]
16 Hb_002740_100 0.1265405219 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
17 Hb_012807_150 0.128798244 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
18 Hb_010050_020 0.1294934477 - - PREDICTED: uncharacterized protein LOC102601222 [Solanum tuberosum]
19 Hb_000424_030 0.1297240902 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000941_120 0.1299697321 - - hypothetical protein JCGZ_25565 [Jatropha curcas]

Gene co-expression network

sample Hb_003001_130 Hb_003001_130 Hb_000603_020 Hb_000603_020 Hb_003001_130--Hb_000603_020 Hb_000928_120 Hb_000928_120 Hb_003001_130--Hb_000928_120 Hb_000283_140 Hb_000283_140 Hb_003001_130--Hb_000283_140 Hb_004241_110 Hb_004241_110 Hb_003001_130--Hb_004241_110 Hb_000227_280 Hb_000227_280 Hb_003001_130--Hb_000227_280 Hb_000271_220 Hb_000271_220 Hb_003001_130--Hb_000271_220 Hb_000603_020--Hb_000271_220 Hb_012807_150 Hb_012807_150 Hb_000603_020--Hb_012807_150 Hb_000603_020--Hb_000283_140 Hb_000320_350 Hb_000320_350 Hb_000603_020--Hb_000320_350 Hb_000424_030 Hb_000424_030 Hb_000603_020--Hb_000424_030 Hb_004522_030 Hb_004522_030 Hb_000928_120--Hb_004522_030 Hb_000928_120--Hb_000283_140 Hb_000622_330 Hb_000622_330 Hb_000928_120--Hb_000622_330 Hb_000570_020 Hb_000570_020 Hb_000928_120--Hb_000570_020 Hb_007537_030 Hb_007537_030 Hb_000928_120--Hb_007537_030 Hb_000283_140--Hb_012807_150 Hb_004943_040 Hb_004943_040 Hb_000283_140--Hb_004943_040 Hb_000638_060 Hb_000638_060 Hb_000283_140--Hb_000638_060 Hb_000283_140--Hb_000570_020 Hb_000283_140--Hb_000271_220 Hb_084147_010 Hb_084147_010 Hb_004241_110--Hb_084147_010 Hb_012395_110 Hb_012395_110 Hb_004241_110--Hb_012395_110 Hb_007894_070 Hb_007894_070 Hb_004241_110--Hb_007894_070 Hb_004241_110--Hb_000227_280 Hb_001318_100 Hb_001318_100 Hb_004241_110--Hb_001318_100 Hb_005488_130 Hb_005488_130 Hb_000227_280--Hb_005488_130 Hb_000227_280--Hb_007894_070 Hb_000227_280--Hb_000283_140 Hb_000028_430 Hb_000028_430 Hb_000227_280--Hb_000028_430 Hb_000271_220--Hb_012807_150 Hb_000349_200 Hb_000349_200 Hb_000271_220--Hb_000349_200 Hb_003006_090 Hb_003006_090 Hb_000271_220--Hb_003006_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.118088 1.36948 1.29901 3.48034 0.120438 0.210811
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.204992 0.24193 0.19053 0.738779 1.78309

CAGE analysis