Hb_005488_130

Information

Type -
Description -
Location Contig5488: 105737-107596
Sequence    

Annotation

kegg
ID rcu:RCOM_1517500
description transporter, putative
nr
ID XP_002524032.1
description transporter, putative [Ricinus communis]
swissprot
ID Q9XIQ7
description Probable folate-biopterin transporter 7 OS=Arabidopsis thaliana GN=At1g64890 PE=2 SV=1
trembl
ID B9SDG3
description Transporter, putative OS=Ricinus communis GN=RCOM_1517500 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable folate-biopterin transporter 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48116: 106471-106683
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005488_130 0.0 - - transporter, putative [Ricinus communis]
2 Hb_000227_280 0.0876576462 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 [Jatropha curcas]
3 Hb_000140_060 0.1192669935 - - 50S ribosomal protein L5, putative [Ricinus communis]
4 Hb_000272_030 0.122494908 - - PREDICTED: WD repeat-containing protein 76 isoform X1 [Jatropha curcas]
5 Hb_004678_010 0.1260550207 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
6 Hb_007894_070 0.1327966175 - - PREDICTED: uncharacterized protein LOC105632955 [Jatropha curcas]
7 Hb_001153_100 0.1332504331 transcription factor TF Family: HB PREDICTED: homeobox protein HD1 [Jatropha curcas]
8 Hb_002835_280 0.1371756331 - - PREDICTED: L-type lectin-domain containing receptor kinase S.1 [Jatropha curcas]
9 Hb_000181_330 0.1378177224 - - ubiquitin ligase protein cop1, putative [Ricinus communis]
10 Hb_032568_010 0.1385900045 - - PREDICTED: protein phosphatase 2C 56-like [Jatropha curcas]
11 Hb_001677_040 0.1391447536 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
12 Hb_008179_030 0.1428246618 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 8 [Jatropha curcas]
13 Hb_002391_320 0.146130225 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
14 Hb_002026_030 0.146676254 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
15 Hb_000322_030 0.1476055376 - - PREDICTED: uncharacterized protein LOC105637911 [Jatropha curcas]
16 Hb_006570_060 0.1477353842 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]
17 Hb_017098_040 0.1482315737 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
18 Hb_002759_220 0.148833011 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
19 Hb_006414_010 0.1490105079 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
20 Hb_001014_020 0.149119902 - - gene GA family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_005488_130 Hb_005488_130 Hb_000227_280 Hb_000227_280 Hb_005488_130--Hb_000227_280 Hb_000140_060 Hb_000140_060 Hb_005488_130--Hb_000140_060 Hb_000272_030 Hb_000272_030 Hb_005488_130--Hb_000272_030 Hb_004678_010 Hb_004678_010 Hb_005488_130--Hb_004678_010 Hb_007894_070 Hb_007894_070 Hb_005488_130--Hb_007894_070 Hb_001153_100 Hb_001153_100 Hb_005488_130--Hb_001153_100 Hb_000227_280--Hb_007894_070 Hb_003001_130 Hb_003001_130 Hb_000227_280--Hb_003001_130 Hb_000283_140 Hb_000283_140 Hb_000227_280--Hb_000283_140 Hb_000028_430 Hb_000028_430 Hb_000227_280--Hb_000028_430 Hb_004241_110 Hb_004241_110 Hb_000227_280--Hb_004241_110 Hb_000069_360 Hb_000069_360 Hb_000140_060--Hb_000069_360 Hb_003994_080 Hb_003994_080 Hb_000140_060--Hb_003994_080 Hb_000422_080 Hb_000422_080 Hb_000140_060--Hb_000422_080 Hb_001195_660 Hb_001195_660 Hb_000140_060--Hb_001195_660 Hb_000749_020 Hb_000749_020 Hb_000140_060--Hb_000749_020 Hb_000099_170 Hb_000099_170 Hb_000140_060--Hb_000099_170 Hb_006570_060 Hb_006570_060 Hb_000272_030--Hb_006570_060 Hb_000260_410 Hb_000260_410 Hb_000272_030--Hb_000260_410 Hb_000941_090 Hb_000941_090 Hb_000272_030--Hb_000941_090 Hb_002838_010 Hb_002838_010 Hb_000272_030--Hb_002838_010 Hb_000173_270 Hb_000173_270 Hb_000272_030--Hb_000173_270 Hb_000107_090 Hb_000107_090 Hb_000272_030--Hb_000107_090 Hb_017098_040 Hb_017098_040 Hb_004678_010--Hb_017098_040 Hb_003912_080 Hb_003912_080 Hb_004678_010--Hb_003912_080 Hb_002026_030 Hb_002026_030 Hb_004678_010--Hb_002026_030 Hb_000635_050 Hb_000635_050 Hb_004678_010--Hb_000635_050 Hb_001141_060 Hb_001141_060 Hb_004678_010--Hb_001141_060 Hb_002675_080 Hb_002675_080 Hb_004678_010--Hb_002675_080 Hb_006414_010 Hb_006414_010 Hb_007894_070--Hb_006414_010 Hb_000210_040 Hb_000210_040 Hb_007894_070--Hb_000210_040 Hb_000659_040 Hb_000659_040 Hb_007894_070--Hb_000659_040 Hb_007894_070--Hb_004241_110 Hb_001318_100 Hb_001318_100 Hb_007894_070--Hb_001318_100 Hb_005731_100 Hb_005731_100 Hb_001153_100--Hb_005731_100 Hb_000357_070 Hb_000357_070 Hb_001153_100--Hb_000357_070 Hb_001433_150 Hb_001433_150 Hb_001153_100--Hb_001433_150 Hb_002835_280 Hb_002835_280 Hb_001153_100--Hb_002835_280 Hb_022425_050 Hb_022425_050 Hb_001153_100--Hb_022425_050 Hb_034579_020 Hb_034579_020 Hb_001153_100--Hb_034579_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0568907 2.12166 2.96964 3.57134 0.119616 0.146463
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.231036 0.613469 0.38516 0.525551 4.24211

CAGE analysis