Hb_001433_150

Information

Type -
Description -
Location Contig1433: 149822-151003
Sequence    

Annotation

kegg
ID rcu:RCOM_1688330
description hypothetical protein
nr
ID XP_002509855.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCH1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1688330 PE=4 SV=1
Gene Ontology
ID GO:0016491
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001433_150 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001180_010 0.106198728 - - PREDICTED: glucan endo-1,3-beta-glucosidase 9 [Jatropha curcas]
3 Hb_002028_110 0.1097148979 - - PREDICTED: F-box only protein 13 [Jatropha curcas]
4 Hb_001153_100 0.1155774473 transcription factor TF Family: HB PREDICTED: homeobox protein HD1 [Jatropha curcas]
5 Hb_002641_120 0.118670495 - - PREDICTED: calmodulin [Jatropha curcas]
6 Hb_001544_050 0.1193856638 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
7 Hb_002759_220 0.120187997 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
8 Hb_004994_330 0.1205566591 - - DNA binding protein, putative [Ricinus communis]
9 Hb_000357_070 0.1276069995 - - -
10 Hb_000388_080 0.1285582673 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
11 Hb_000207_350 0.1291339755 - - PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]
12 Hb_000193_340 0.1297714317 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
13 Hb_004855_020 0.1298925684 - - hypothetical protein POPTR_0006s10010g [Populus trichocarpa]
14 Hb_001017_130 0.1298931826 - - hypothetical protein POPTR_0010s06070g [Populus trichocarpa]
15 Hb_002701_070 0.1304804694 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
16 Hb_000046_480 0.1312646266 - - PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]
17 Hb_007101_260 0.1326477675 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
18 Hb_000076_030 0.1330524486 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
19 Hb_000322_030 0.1342379194 - - PREDICTED: uncharacterized protein LOC105637911 [Jatropha curcas]
20 Hb_006153_160 0.1348337972 - - PREDICTED: oxysterol-binding protein-related protein 2A isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_001433_150 Hb_001433_150 Hb_001180_010 Hb_001180_010 Hb_001433_150--Hb_001180_010 Hb_002028_110 Hb_002028_110 Hb_001433_150--Hb_002028_110 Hb_001153_100 Hb_001153_100 Hb_001433_150--Hb_001153_100 Hb_002641_120 Hb_002641_120 Hb_001433_150--Hb_002641_120 Hb_001544_050 Hb_001544_050 Hb_001433_150--Hb_001544_050 Hb_002759_220 Hb_002759_220 Hb_001433_150--Hb_002759_220 Hb_001180_010--Hb_001544_050 Hb_000076_030 Hb_000076_030 Hb_001180_010--Hb_000076_030 Hb_004994_330 Hb_004994_330 Hb_001180_010--Hb_004994_330 Hb_048476_140 Hb_048476_140 Hb_001180_010--Hb_048476_140 Hb_000465_410 Hb_000465_410 Hb_001180_010--Hb_000465_410 Hb_002701_070 Hb_002701_070 Hb_001180_010--Hb_002701_070 Hb_000357_070 Hb_000357_070 Hb_002028_110--Hb_000357_070 Hb_000388_080 Hb_000388_080 Hb_002028_110--Hb_000388_080 Hb_000689_050 Hb_000689_050 Hb_002028_110--Hb_000689_050 Hb_012807_150 Hb_012807_150 Hb_002028_110--Hb_012807_150 Hb_007101_260 Hb_007101_260 Hb_002028_110--Hb_007101_260 Hb_005731_100 Hb_005731_100 Hb_001153_100--Hb_005731_100 Hb_001153_100--Hb_000357_070 Hb_002835_280 Hb_002835_280 Hb_001153_100--Hb_002835_280 Hb_022425_050 Hb_022425_050 Hb_001153_100--Hb_022425_050 Hb_034579_020 Hb_034579_020 Hb_001153_100--Hb_034579_020 Hb_000753_110 Hb_000753_110 Hb_002641_120--Hb_000753_110 Hb_000310_060 Hb_000310_060 Hb_002641_120--Hb_000310_060 Hb_001377_530 Hb_001377_530 Hb_002641_120--Hb_001377_530 Hb_003398_040 Hb_003398_040 Hb_002641_120--Hb_003398_040 Hb_002641_120--Hb_002701_070 Hb_000390_210 Hb_000390_210 Hb_001544_050--Hb_000390_210 Hb_001544_050--Hb_000465_410 Hb_001544_050--Hb_002701_070 Hb_000749_260 Hb_000749_260 Hb_001544_050--Hb_000749_260 Hb_001544_050--Hb_004994_330 Hb_003226_200 Hb_003226_200 Hb_002759_220--Hb_003226_200 Hb_000193_340 Hb_000193_340 Hb_002759_220--Hb_000193_340 Hb_003226_250 Hb_003226_250 Hb_002759_220--Hb_003226_250 Hb_161396_010 Hb_161396_010 Hb_002759_220--Hb_161396_010 Hb_006153_160 Hb_006153_160 Hb_002759_220--Hb_006153_160 Hb_000805_010 Hb_000805_010 Hb_002759_220--Hb_000805_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.311673 1.39615 4.93075 4.6797 0.0689612 0.139744
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.743614 0.227474 0.664449 0.924515 4.50209

CAGE analysis