Hb_003226_250

Information

Type -
Description -
Location Contig3226: 184516-188314
Sequence    

Annotation

kegg
ID pop:POPTR_0014s12380g
description POPTRDRAFT_572692; UDP-XYLOSE SYNTHASE 4 family protein
nr
ID XP_012082771.1
description PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]
swissprot
ID Q9LZI2
description UDP-glucuronic acid decarboxylase 2 OS=Arabidopsis thaliana GN=UXS2 PE=1 SV=1
trembl
ID A0A067K8N6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13935 PE=4 SV=1
Gene Ontology
ID GO:0003824
description udp-glucuronic acid decarboxylase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34192: 184559-188300
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003226_250 0.0 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]
2 Hb_001369_010 0.0988250733 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
3 Hb_000808_150 0.1134286487 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
4 Hb_011310_040 0.1140597024 transcription factor TF Family: bZIP transcription factor hy5, putative [Ricinus communis]
5 Hb_002759_220 0.1148905813 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
6 Hb_002596_080 0.1156970577 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g04160 [Jatropha curcas]
7 Hb_003462_040 0.1162290801 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
8 Hb_000077_310 0.1164642086 - - PREDICTED: clathrin light chain 1 [Jatropha curcas]
9 Hb_000417_380 0.1212178061 - - SecY protein transport family protein [Theobroma cacao]
10 Hb_001916_150 0.1213814453 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3 [Vitis vinifera]
11 Hb_000805_010 0.1215846267 - - PREDICTED: uncharacterized protein LOC105629931 [Jatropha curcas]
12 Hb_005228_040 0.1231225889 - - PREDICTED: uncharacterized protein At4g06598-like [Jatropha curcas]
13 Hb_006750_010 0.1248728406 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
14 Hb_001195_660 0.1250691469 - - metalloendopeptidase, putative [Ricinus communis]
15 Hb_003006_090 0.1279287291 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
16 Hb_000139_300 0.1282712294 - - hypothetical protein POPTR_0008s19950g [Populus trichocarpa]
17 Hb_000140_060 0.1302442787 - - 50S ribosomal protein L5, putative [Ricinus communis]
18 Hb_000107_350 0.1325029627 - - PREDICTED: uncharacterized protein LOC105635576 [Jatropha curcas]
19 Hb_003935_070 0.1353093544 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
20 Hb_001493_060 0.1363370671 - - PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]

Gene co-expression network

sample Hb_003226_250 Hb_003226_250 Hb_001369_010 Hb_001369_010 Hb_003226_250--Hb_001369_010 Hb_000808_150 Hb_000808_150 Hb_003226_250--Hb_000808_150 Hb_011310_040 Hb_011310_040 Hb_003226_250--Hb_011310_040 Hb_002759_220 Hb_002759_220 Hb_003226_250--Hb_002759_220 Hb_002596_080 Hb_002596_080 Hb_003226_250--Hb_002596_080 Hb_003462_040 Hb_003462_040 Hb_003226_250--Hb_003462_040 Hb_001369_010--Hb_003462_040 Hb_001369_010--Hb_000808_150 Hb_001195_660 Hb_001195_660 Hb_001369_010--Hb_001195_660 Hb_006750_010 Hb_006750_010 Hb_001369_010--Hb_006750_010 Hb_000749_020 Hb_000749_020 Hb_001369_010--Hb_000749_020 Hb_000077_310 Hb_000077_310 Hb_000808_150--Hb_000077_310 Hb_000139_300 Hb_000139_300 Hb_000808_150--Hb_000139_300 Hb_000808_150--Hb_000749_020 Hb_000327_360 Hb_000327_360 Hb_000808_150--Hb_000327_360 Hb_161396_010 Hb_161396_010 Hb_000808_150--Hb_161396_010 Hb_011310_040--Hb_002596_080 Hb_011310_040--Hb_000139_300 Hb_002157_270 Hb_002157_270 Hb_011310_040--Hb_002157_270 Hb_002164_020 Hb_002164_020 Hb_011310_040--Hb_002164_020 Hb_004306_110 Hb_004306_110 Hb_011310_040--Hb_004306_110 Hb_003226_200 Hb_003226_200 Hb_002759_220--Hb_003226_200 Hb_000193_340 Hb_000193_340 Hb_002759_220--Hb_000193_340 Hb_002759_220--Hb_161396_010 Hb_006153_160 Hb_006153_160 Hb_002759_220--Hb_006153_160 Hb_000805_010 Hb_000805_010 Hb_002759_220--Hb_000805_010 Hb_001493_060 Hb_001493_060 Hb_002596_080--Hb_001493_060 Hb_002596_080--Hb_002157_270 Hb_001195_090 Hb_001195_090 Hb_002596_080--Hb_001195_090 Hb_000445_150 Hb_000445_150 Hb_002596_080--Hb_000445_150 Hb_003462_040--Hb_006750_010 Hb_003006_090 Hb_003006_090 Hb_003462_040--Hb_003006_090 Hb_019516_060 Hb_019516_060 Hb_003462_040--Hb_019516_060 Hb_003462_040--Hb_001195_660
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.01834 10.792 22.4008 60.2517 2.41209 3.2032
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.39533 5.97297 9.45048 7.608 63.4244

CAGE analysis