Hb_011310_040

Information

Type transcription factor
Description TF Family: bZIP
Location Contig11310: 8219-10245
Sequence    

Annotation

kegg
ID rcu:RCOM_0924540
description transcription factor hy5, putative
nr
ID XP_002515537.1
description transcription factor hy5, putative [Ricinus communis]
swissprot
ID O24646
description Transcription factor HY5 OS=Arabidopsis thaliana GN=HY5 PE=1 SV=1
trembl
ID B9RP68
description Transcription factor hy5, putative OS=Ricinus communis GN=RCOM_0924540 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription factor hy5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03898: 8226-9386 , PASA_asmbl_03899: 8226-10348
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011310_040 0.0 transcription factor TF Family: bZIP transcription factor hy5, putative [Ricinus communis]
2 Hb_002596_080 0.0987278178 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g04160 [Jatropha curcas]
3 Hb_000139_300 0.1024084093 - - hypothetical protein POPTR_0008s19950g [Populus trichocarpa]
4 Hb_002157_270 0.1117354711 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
5 Hb_003226_250 0.1140597024 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]
6 Hb_002164_020 0.1142175692 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004306_110 0.1220692937 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
8 Hb_000107_350 0.1249119931 - - PREDICTED: uncharacterized protein LOC105635576 [Jatropha curcas]
9 Hb_005228_040 0.1286619884 - - PREDICTED: uncharacterized protein At4g06598-like [Jatropha curcas]
10 Hb_001493_060 0.1300637062 - - PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]
11 Hb_000808_150 0.1327827769 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
12 Hb_026549_070 0.1340510335 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
13 Hb_000390_190 0.1346931718 - - ATP binding protein, putative [Ricinus communis]
14 Hb_000920_310 0.1354196152 - - Ran GTPase binding protein, putative [Ricinus communis]
15 Hb_009913_040 0.1365138896 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
16 Hb_000062_400 0.1378068584 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000086_210 0.1387954684 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_009079_050 0.1414012013 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
19 Hb_002129_020 0.1440387422 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX14 [Jatropha curcas]
20 Hb_001049_150 0.1476215834 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]

Gene co-expression network

sample Hb_011310_040 Hb_011310_040 Hb_002596_080 Hb_002596_080 Hb_011310_040--Hb_002596_080 Hb_000139_300 Hb_000139_300 Hb_011310_040--Hb_000139_300 Hb_002157_270 Hb_002157_270 Hb_011310_040--Hb_002157_270 Hb_003226_250 Hb_003226_250 Hb_011310_040--Hb_003226_250 Hb_002164_020 Hb_002164_020 Hb_011310_040--Hb_002164_020 Hb_004306_110 Hb_004306_110 Hb_011310_040--Hb_004306_110 Hb_001493_060 Hb_001493_060 Hb_002596_080--Hb_001493_060 Hb_002596_080--Hb_002157_270 Hb_002596_080--Hb_003226_250 Hb_001195_090 Hb_001195_090 Hb_002596_080--Hb_001195_090 Hb_000445_150 Hb_000445_150 Hb_002596_080--Hb_000445_150 Hb_000086_210 Hb_000086_210 Hb_000139_300--Hb_000086_210 Hb_026549_070 Hb_026549_070 Hb_000139_300--Hb_026549_070 Hb_005074_040 Hb_005074_040 Hb_000139_300--Hb_005074_040 Hb_000139_300--Hb_004306_110 Hb_009079_050 Hb_009079_050 Hb_000139_300--Hb_009079_050 Hb_000808_150 Hb_000808_150 Hb_000139_300--Hb_000808_150 Hb_002129_020 Hb_002129_020 Hb_002157_270--Hb_002129_020 Hb_000950_030 Hb_000950_030 Hb_002157_270--Hb_000950_030 Hb_002157_270--Hb_001493_060 Hb_002157_270--Hb_002164_020 Hb_001369_010 Hb_001369_010 Hb_003226_250--Hb_001369_010 Hb_003226_250--Hb_000808_150 Hb_002759_220 Hb_002759_220 Hb_003226_250--Hb_002759_220 Hb_003462_040 Hb_003462_040 Hb_003226_250--Hb_003462_040 Hb_002164_020--Hb_001493_060 Hb_002164_020--Hb_026549_070 Hb_002164_020--Hb_009079_050 Hb_002164_020--Hb_000139_300 Hb_000011_220 Hb_000011_220 Hb_002164_020--Hb_000011_220 Hb_009913_040 Hb_009913_040 Hb_002164_020--Hb_009913_040 Hb_004306_110--Hb_026549_070 Hb_000062_400 Hb_000062_400 Hb_004306_110--Hb_000062_400 Hb_000390_190 Hb_000390_190 Hb_004306_110--Hb_000390_190 Hb_001976_030 Hb_001976_030 Hb_004306_110--Hb_001976_030 Hb_000920_310 Hb_000920_310 Hb_004306_110--Hb_000920_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.22701 2.60625 9.97259 31.3389 1.66729 3.66777
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.20985 3.24025 5.2536 3.17814 23.9554

CAGE analysis