Hb_001493_060

Information

Type -
Description -
Location Contig1493: 57461-60720
Sequence    

Annotation

kegg
ID rcu:RCOM_0995430
description hypothetical protein
nr
ID XP_012068783.1
description PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]
swissprot
ID Q8WR51
description GDP-fucose protein O-fucosyltransferase 2 OS=Caenorhabditis elegans GN=pad-2 PE=1 SV=1
trembl
ID A0A067L061
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24617 PE=4 SV=1
Gene Ontology
ID GO:0016757
description o-fucosyltransferase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12432: 57461-60501
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001493_060 0.0 - - PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]
2 Hb_002164_020 0.0836853996 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000347_190 0.110484223 - - PREDICTED: transmembrane protein 87A [Jatropha curcas]
4 Hb_002596_080 0.1125503794 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g04160 [Jatropha curcas]
5 Hb_009079_050 0.1157492202 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
6 Hb_000580_110 0.1158474449 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
7 Hb_001195_090 0.1182550105 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
8 Hb_002157_270 0.1183107278 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
9 Hb_001969_140 0.1203096889 - - PREDICTED: uncharacterized protein LOC105634929 [Jatropha curcas]
10 Hb_000417_380 0.1204170124 - - SecY protein transport family protein [Theobroma cacao]
11 Hb_026549_070 0.1240588225 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
12 Hb_011310_040 0.1300637062 transcription factor TF Family: bZIP transcription factor hy5, putative [Ricinus communis]
13 Hb_002129_020 0.1320343521 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX14 [Jatropha curcas]
14 Hb_000236_180 0.1329875479 - - serine hydroxymethyltransferase, putative [Ricinus communis]
15 Hb_000139_300 0.1346965774 - - hypothetical protein POPTR_0008s19950g [Populus trichocarpa]
16 Hb_000011_220 0.1359709429 - - PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]
17 Hb_003226_250 0.1363370671 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]
18 Hb_000077_310 0.1376822921 - - PREDICTED: clathrin light chain 1 [Jatropha curcas]
19 Hb_000193_210 0.1386828171 - - PREDICTED: LOW QUALITY PROTEIN: galactoside 2-alpha-L-fucosyltransferase [Jatropha curcas]
20 Hb_003006_090 0.1397704939 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001493_060 Hb_001493_060 Hb_002164_020 Hb_002164_020 Hb_001493_060--Hb_002164_020 Hb_000347_190 Hb_000347_190 Hb_001493_060--Hb_000347_190 Hb_002596_080 Hb_002596_080 Hb_001493_060--Hb_002596_080 Hb_009079_050 Hb_009079_050 Hb_001493_060--Hb_009079_050 Hb_000580_110 Hb_000580_110 Hb_001493_060--Hb_000580_110 Hb_001195_090 Hb_001195_090 Hb_001493_060--Hb_001195_090 Hb_026549_070 Hb_026549_070 Hb_002164_020--Hb_026549_070 Hb_002164_020--Hb_009079_050 Hb_000139_300 Hb_000139_300 Hb_002164_020--Hb_000139_300 Hb_000011_220 Hb_000011_220 Hb_002164_020--Hb_000011_220 Hb_009913_040 Hb_009913_040 Hb_002164_020--Hb_009913_040 Hb_004242_170 Hb_004242_170 Hb_000347_190--Hb_004242_170 Hb_000350_030 Hb_000350_030 Hb_000347_190--Hb_000350_030 Hb_003006_090 Hb_003006_090 Hb_000347_190--Hb_003006_090 Hb_001677_040 Hb_001677_040 Hb_000347_190--Hb_001677_040 Hb_035834_010 Hb_035834_010 Hb_000347_190--Hb_035834_010 Hb_011310_040 Hb_011310_040 Hb_002596_080--Hb_011310_040 Hb_002157_270 Hb_002157_270 Hb_002596_080--Hb_002157_270 Hb_003226_250 Hb_003226_250 Hb_002596_080--Hb_003226_250 Hb_002596_080--Hb_001195_090 Hb_000445_150 Hb_000445_150 Hb_002596_080--Hb_000445_150 Hb_009079_050--Hb_026549_070 Hb_001369_100 Hb_001369_100 Hb_009079_050--Hb_001369_100 Hb_009079_050--Hb_000139_300 Hb_002817_040 Hb_002817_040 Hb_009079_050--Hb_002817_040 Hb_001195_660 Hb_001195_660 Hb_009079_050--Hb_001195_660 Hb_000236_180 Hb_000236_180 Hb_000580_110--Hb_000236_180 Hb_000417_380 Hb_000417_380 Hb_000580_110--Hb_000417_380 Hb_002495_030 Hb_002495_030 Hb_000580_110--Hb_002495_030 Hb_000077_310 Hb_000077_310 Hb_000580_110--Hb_000077_310 Hb_001195_380 Hb_001195_380 Hb_000580_110--Hb_001195_380 Hb_002129_020 Hb_002129_020 Hb_001195_090--Hb_002129_020 Hb_028639_030 Hb_028639_030 Hb_001195_090--Hb_028639_030 Hb_001216_110 Hb_001216_110 Hb_001195_090--Hb_001216_110 Hb_000684_310 Hb_000684_310 Hb_001195_090--Hb_000684_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.03302 4.03805 11.1865 39.1778 4.27755 4.63642
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.88658 2.35954 3.83371 7.86228 33.6923

CAGE analysis