Hb_035834_010

Information

Type -
Description -
Location Contig35834: 67-2289
Sequence    

Annotation

kegg
ID rcu:RCOM_0309200
description zinc finger protein, putative
nr
ID XP_002534584.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q9FLN0
description GDSL esterase/lipase 1 OS=Arabidopsis thaliana GN=GLIP1 PE=1 SV=1
trembl
ID B9T8L5
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0309200 PE=4 SV=1
Gene Ontology
ID GO:0016788
description gdsl esterase lipase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37000: 83-2206
cDNA
(Sanger)
(ID:Location)		 042_G14.ab1: 98-1482 , 052_H01.ab1: 98-1498

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_035834_010 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_036388_010 0.0934592456 - - PREDICTED: formate--tetrahydrofolate ligase [Populus euphratica]
3 Hb_000445_370 0.0998614319 - - PREDICTED: probable methyltransferase PMT24 [Jatropha curcas]
4 Hb_003783_050 0.1052990101 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000441_050 0.1056735883 - - PREDICTED: 187-kDa microtubule-associated protein AIR9 [Jatropha curcas]
6 Hb_004242_170 0.1120075882 - - calcium/calmodulin-regulated receptor-like kinase [Manihot esculenta]
7 Hb_000120_740 0.1120235556 desease resistance Gene Name: VARLMGL conserved hypothetical protein [Ricinus communis]
8 Hb_000414_080 0.1159542212 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
9 Hb_001365_010 0.1197127095 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
10 Hb_000270_660 0.1212581154 - - purine permease, putative [Ricinus communis]
11 Hb_014497_010 0.1220544091 - - PREDICTED: uncharacterized protein LOC105635153 [Jatropha curcas]
12 Hb_033683_010 0.1220985466 - - myo inositol monophosphatase, putative [Ricinus communis]
13 Hb_000167_040 0.1221417849 - - PREDICTED: serine carboxypeptidase-like [Jatropha curcas]
14 Hb_009193_010 0.1231868269 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
15 Hb_000270_710 0.1281766714 - - PREDICTED: WAT1-related protein At5g40240-like isoform X1 [Jatropha curcas]
16 Hb_006736_050 0.1287756346 - - hypothetical protein POPTR_0006s04450g [Populus trichocarpa]
17 Hb_008025_010 0.12935603 - - PREDICTED: lysosomal beta glucosidase-like [Musa acuminata subsp. malaccensis]
18 Hb_000454_100 0.130273448 - - aldo-keto reductase, putative [Ricinus communis]
19 Hb_000768_150 0.1303299503 - - PREDICTED: glycine-rich protein A3-like [Fragaria vesca subsp. vesca]
20 Hb_000997_320 0.1303950818 - - PREDICTED: acylamino-acid-releasing enzyme-like [Malus domestica]

Gene co-expression network

sample Hb_035834_010 Hb_035834_010 Hb_036388_010 Hb_036388_010 Hb_035834_010--Hb_036388_010 Hb_000445_370 Hb_000445_370 Hb_035834_010--Hb_000445_370 Hb_003783_050 Hb_003783_050 Hb_035834_010--Hb_003783_050 Hb_000441_050 Hb_000441_050 Hb_035834_010--Hb_000441_050 Hb_004242_170 Hb_004242_170 Hb_035834_010--Hb_004242_170 Hb_000120_740 Hb_000120_740 Hb_035834_010--Hb_000120_740 Hb_000768_150 Hb_000768_150 Hb_036388_010--Hb_000768_150 Hb_036388_010--Hb_003783_050 Hb_000997_320 Hb_000997_320 Hb_036388_010--Hb_000997_320 Hb_006736_050 Hb_006736_050 Hb_036388_010--Hb_006736_050 Hb_000417_380 Hb_000417_380 Hb_036388_010--Hb_000417_380 Hb_003582_090 Hb_003582_090 Hb_000445_370--Hb_003582_090 Hb_006916_030 Hb_006916_030 Hb_000445_370--Hb_006916_030 Hb_000066_040 Hb_000066_040 Hb_000445_370--Hb_000066_040 Hb_000167_040 Hb_000167_040 Hb_000445_370--Hb_000167_040 Hb_009193_010 Hb_009193_010 Hb_000445_370--Hb_009193_010 Hb_000941_120 Hb_000941_120 Hb_003783_050--Hb_000941_120 Hb_030312_030 Hb_030312_030 Hb_003783_050--Hb_030312_030 Hb_001916_150 Hb_001916_150 Hb_003783_050--Hb_001916_150 Hb_003783_050--Hb_000445_370 Hb_005977_060 Hb_005977_060 Hb_000441_050--Hb_005977_060 Hb_000441_050--Hb_004242_170 Hb_001053_020 Hb_001053_020 Hb_000441_050--Hb_001053_020 Hb_001365_020 Hb_001365_020 Hb_000441_050--Hb_001365_020 Hb_002374_450 Hb_002374_450 Hb_000441_050--Hb_002374_450 Hb_005276_070 Hb_005276_070 Hb_000441_050--Hb_005276_070 Hb_004242_170--Hb_001053_020 Hb_000108_150 Hb_000108_150 Hb_004242_170--Hb_000108_150 Hb_004242_170--Hb_005977_060 Hb_001348_090 Hb_001348_090 Hb_004242_170--Hb_001348_090 Hb_009692_040 Hb_009692_040 Hb_004242_170--Hb_009692_040 Hb_000120_740--Hb_036388_010 Hb_004326_010 Hb_004326_010 Hb_000120_740--Hb_004326_010 Hb_001105_130 Hb_001105_130 Hb_000120_740--Hb_001105_130 Hb_000590_070 Hb_000590_070 Hb_000120_740--Hb_000590_070 Hb_000120_740--Hb_009193_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.80237 16.6654 58.2823 81.759 13.8439 13.0475
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.71255 6.49073 8.17942 45.8164 104.451

CAGE analysis