Hb_000941_120

Information

Type -
Description -
Location Contig941: 118045-122506
Sequence    

Annotation

kegg
ID rcu:RCOM_0446280
description Ubiquitin ligase SINAT2, putative
nr
ID KDP24649.1
description hypothetical protein JCGZ_25565 [Jatropha curcas]
swissprot
ID Q9M2P4
description E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana GN=SINAT2 PE=1 SV=1
trembl
ID A0A067JYP2
description E3 ubiquitin-protein ligase OS=Jatropha curcas GN=JCGZ_25565 PE=3 SV=1
Gene Ontology
ID GO:0005634
description e3 ubiquitin-protein ligase sinat2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63174: 118084-121110
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000941_120 0.0 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
2 Hb_003783_050 0.091639412 - - conserved hypothetical protein [Ricinus communis]
3 Hb_030312_030 0.1043646494 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
4 Hb_000283_140 0.1086223735 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
5 Hb_004326_010 0.1114363155 - - cationic amino acid transporter, putative [Ricinus communis]
6 Hb_004943_040 0.1149859123 - - PREDICTED: BTB/POZ domain-containing protein At1g30440 isoform X1 [Jatropha curcas]
7 Hb_000157_140 0.1164664522 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
8 Hb_000227_280 0.1180387822 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 [Jatropha curcas]
9 Hb_000570_020 0.118920224 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
10 Hb_000768_150 0.1257576092 - - PREDICTED: glycine-rich protein A3-like [Fragaria vesca subsp. vesca]
11 Hb_000115_360 0.1260684628 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
12 Hb_012053_020 0.1278723558 - - PREDICTED: magnesium transporter MRS2-11, chloroplastic [Jatropha curcas]
13 Hb_000327_360 0.1283589701 - - unnamed protein product [Coffea canephora]
14 Hb_003006_080 0.1293637836 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like isoform X1 [Jatropha curcas]
15 Hb_004522_030 0.1295022004 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 3 [Jatropha curcas]
16 Hb_003001_130 0.1299697321 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000077_310 0.1306344064 - - PREDICTED: clathrin light chain 1 [Jatropha curcas]
18 Hb_036388_010 0.1312483005 - - PREDICTED: formate--tetrahydrofolate ligase [Populus euphratica]
19 Hb_000928_120 0.1323312091 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
20 Hb_004129_010 0.1325342172 - - aspartate aminotransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000941_120 Hb_000941_120 Hb_003783_050 Hb_003783_050 Hb_000941_120--Hb_003783_050 Hb_030312_030 Hb_030312_030 Hb_000941_120--Hb_030312_030 Hb_000283_140 Hb_000283_140 Hb_000941_120--Hb_000283_140 Hb_004326_010 Hb_004326_010 Hb_000941_120--Hb_004326_010 Hb_004943_040 Hb_004943_040 Hb_000941_120--Hb_004943_040 Hb_000157_140 Hb_000157_140 Hb_000941_120--Hb_000157_140 Hb_036388_010 Hb_036388_010 Hb_003783_050--Hb_036388_010 Hb_003783_050--Hb_030312_030 Hb_001916_150 Hb_001916_150 Hb_003783_050--Hb_001916_150 Hb_035834_010 Hb_035834_010 Hb_003783_050--Hb_035834_010 Hb_000445_370 Hb_000445_370 Hb_003783_050--Hb_000445_370 Hb_001195_370 Hb_001195_370 Hb_030312_030--Hb_001195_370 Hb_001054_060 Hb_001054_060 Hb_030312_030--Hb_001054_060 Hb_003006_080 Hb_003006_080 Hb_030312_030--Hb_003006_080 Hb_002805_090 Hb_002805_090 Hb_030312_030--Hb_002805_090 Hb_012807_150 Hb_012807_150 Hb_000283_140--Hb_012807_150 Hb_000283_140--Hb_004943_040 Hb_000638_060 Hb_000638_060 Hb_000283_140--Hb_000638_060 Hb_000570_020 Hb_000570_020 Hb_000283_140--Hb_000570_020 Hb_000928_120 Hb_000928_120 Hb_000283_140--Hb_000928_120 Hb_000271_220 Hb_000271_220 Hb_000283_140--Hb_000271_220 Hb_007537_030 Hb_007537_030 Hb_004326_010--Hb_007537_030 Hb_004326_010--Hb_000570_020 Hb_004326_010--Hb_000157_140 Hb_000181_460 Hb_000181_460 Hb_004326_010--Hb_000181_460 Hb_000120_740 Hb_000120_740 Hb_004326_010--Hb_000120_740 Hb_001105_130 Hb_001105_130 Hb_004326_010--Hb_001105_130 Hb_004943_040--Hb_000570_020 Hb_001865_100 Hb_001865_100 Hb_004943_040--Hb_001865_100 Hb_000422_080 Hb_000422_080 Hb_004943_040--Hb_000422_080 Hb_004943_040--Hb_000157_140 Hb_004943_040--Hb_002805_090 Hb_004030_060 Hb_004030_060 Hb_000157_140--Hb_004030_060 Hb_000157_140--Hb_007537_030 Hb_007229_050 Hb_007229_050 Hb_000157_140--Hb_007229_050 Hb_007317_020 Hb_007317_020 Hb_000157_140--Hb_007317_020 Hb_011174_080 Hb_011174_080 Hb_000157_140--Hb_011174_080 Hb_000157_140--Hb_000570_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.228537 3.61212 4.8894 10.8252 1.00535 0.69322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.633734 1.39196 1.37322 4.03114 9.35371

CAGE analysis