Hb_000181_460

Information

Type -
Description -
Location Contig181: 393442-398222
Sequence    

Annotation

kegg
ID rcu:RCOM_1632840
description cmp-2-keto-3-deoctulosonate (cmp-kdo) cytidyltransferase, putative (EC:2.7.7.38)
nr
ID XP_002517281.1
description cmp-2-keto-3-deoctulosonate (cmp-kdo) cytidyltransferase, putative [Ricinus communis]
swissprot
ID Q9C920
description 3-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial OS=Arabidopsis thaliana GN=KDSB PE=1 SV=1
trembl
ID B9RU62
description Cmp-2-keto-3-deoctulosonate (Cmp-kdo) cytidyltransferase, putative OS=Ricinus communis GN=RCOM_1632840 PE=3 SV=1
Gene Ontology
ID GO:0005737
description 3-deoxy-manno-octulosonate mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17556: 395329-395558
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000181_460 0.0 - - cmp-2-keto-3-deoctulosonate (cmp-kdo) cytidyltransferase, putative [Ricinus communis]
2 Hb_004326_010 0.1077939147 - - cationic amino acid transporter, putative [Ricinus communis]
3 Hb_005016_010 0.1080645311 - - AMP dependent CoA ligase, putative [Ricinus communis]
4 Hb_010390_010 0.1095764886 - - casein kinase, putative [Ricinus communis]
5 Hb_000110_060 0.1119362402 - - PREDICTED: uncharacterized protein LOC105636258 [Jatropha curcas]
6 Hb_177215_030 0.1158151979 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Hevea brasiliensis]
7 Hb_003044_080 0.1230381554 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
8 Hb_000548_070 0.1233696594 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
9 Hb_000106_030 0.1254847365 - - amino acid transporter, putative [Ricinus communis]
10 Hb_000258_050 0.1256877576 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X2 [Jatropha curcas]
11 Hb_009803_020 0.1271600662 - - hypothetical protein PRUPE_ppa006317mg [Prunus persica]
12 Hb_180378_010 0.127620364 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Populus euphratica]
13 Hb_000849_120 0.1282130905 - - PREDICTED: linoleate 9S-lipoxygenase 6-like [Jatropha curcas]
14 Hb_001473_170 0.1282354675 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
15 Hb_000979_130 0.1294595784 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
16 Hb_002615_030 0.1300024213 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A-like [Populus euphratica]
17 Hb_021943_090 0.1304583465 - - PREDICTED: probable methylenetetrahydrofolate reductase [Jatropha curcas]
18 Hb_000622_060 0.1328420284 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
19 Hb_000683_050 0.1344196419 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
20 Hb_000494_030 0.1344834577 - - PREDICTED: uncharacterized protein LOC105643196 [Jatropha curcas]

Gene co-expression network

sample Hb_000181_460 Hb_000181_460 Hb_004326_010 Hb_004326_010 Hb_000181_460--Hb_004326_010 Hb_005016_010 Hb_005016_010 Hb_000181_460--Hb_005016_010 Hb_010390_010 Hb_010390_010 Hb_000181_460--Hb_010390_010 Hb_000110_060 Hb_000110_060 Hb_000181_460--Hb_000110_060 Hb_177215_030 Hb_177215_030 Hb_000181_460--Hb_177215_030 Hb_003044_080 Hb_003044_080 Hb_000181_460--Hb_003044_080 Hb_007537_030 Hb_007537_030 Hb_004326_010--Hb_007537_030 Hb_000570_020 Hb_000570_020 Hb_004326_010--Hb_000570_020 Hb_000157_140 Hb_000157_140 Hb_004326_010--Hb_000157_140 Hb_000120_740 Hb_000120_740 Hb_004326_010--Hb_000120_740 Hb_001105_130 Hb_001105_130 Hb_004326_010--Hb_001105_130 Hb_180378_010 Hb_180378_010 Hb_005016_010--Hb_180378_010 Hb_000258_050 Hb_000258_050 Hb_005016_010--Hb_000258_050 Hb_002615_030 Hb_002615_030 Hb_005016_010--Hb_002615_030 Hb_005016_010--Hb_010390_010 Hb_001951_060 Hb_001951_060 Hb_005016_010--Hb_001951_060 Hb_005016_010--Hb_177215_030 Hb_000494_030 Hb_000494_030 Hb_010390_010--Hb_000494_030 Hb_004030_060 Hb_004030_060 Hb_010390_010--Hb_004030_060 Hb_000683_050 Hb_000683_050 Hb_010390_010--Hb_000683_050 Hb_001473_170 Hb_001473_170 Hb_010390_010--Hb_001473_170 Hb_007416_070 Hb_007416_070 Hb_010390_010--Hb_007416_070 Hb_000110_060--Hb_002615_030 Hb_003371_070 Hb_003371_070 Hb_000110_060--Hb_003371_070 Hb_000849_120 Hb_000849_120 Hb_000110_060--Hb_000849_120 Hb_001619_060 Hb_001619_060 Hb_000110_060--Hb_001619_060 Hb_021943_090 Hb_021943_090 Hb_000110_060--Hb_021943_090 Hb_000548_070 Hb_000548_070 Hb_177215_030--Hb_000548_070 Hb_177215_030--Hb_180378_010 Hb_177215_030--Hb_002615_030 Hb_000638_130 Hb_000638_130 Hb_177215_030--Hb_000638_130 Hb_003044_080--Hb_000548_070 Hb_000800_090 Hb_000800_090 Hb_003044_080--Hb_000800_090 Hb_009615_060 Hb_009615_060 Hb_003044_080--Hb_009615_060 Hb_001728_140 Hb_001728_140 Hb_003044_080--Hb_001728_140 Hb_002631_130 Hb_002631_130 Hb_003044_080--Hb_002631_130 Hb_000950_010 Hb_000950_010 Hb_003044_080--Hb_000950_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0574078 0.092127 0.163664 0.340209 0.0230195 0.0256034
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.052575 0.0826978 0.151915 0.249607 0.33763

CAGE analysis