Hb_000258_050

Information

Type transcription factor
Description TF Family: B3
Location Contig258: 21441-32102
Sequence    

Annotation

kegg
ID pop:POPTR_0016s14350g
description POPTRDRAFT_577177; hypothetical protein
nr
ID XP_012091052.1
description PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X2 [Jatropha curcas]
swissprot
ID Q5CCK4
description B3 domain-containing transcription repressor VAL2 OS=Arabidopsis thaliana GN=VAL2 PE=2 SV=1
trembl
ID A0A067JPC9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00657 PE=4 SV=1
Gene Ontology
ID GO:0005634
description b3 domain-containing transcription repressor val2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26785: 21560-28947 , PASA_asmbl_26789: 25498-25704 , PASA_asmbl_26791: 29251-31152
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000258_050 0.0 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X2 [Jatropha curcas]
2 Hb_005016_010 0.0763784457 - - AMP dependent CoA ligase, putative [Ricinus communis]
3 Hb_001473_170 0.0929433569 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
4 Hb_001951_060 0.1009148332 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
5 Hb_007313_040 0.1088283575 - - hypothetical protein JCGZ_23401 [Jatropha curcas]
6 Hb_007537_030 0.1089892595 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
7 Hb_034083_020 0.1140545416 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000599_210 0.1146422944 - - serine/threonine-protein kinase, putative [Ricinus communis]
9 Hb_010390_010 0.1170919619 - - casein kinase, putative [Ricinus communis]
10 Hb_002615_030 0.1174546173 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A-like [Populus euphratica]
11 Hb_000365_010 0.1190042619 - - hypothetical protein POPTR_0006s10920g [Populus trichocarpa]
12 Hb_007229_050 0.1207383876 - - PREDICTED: palmitoyl-protein thioesterase 1 isoform X1 [Jatropha curcas]
13 Hb_000157_140 0.1207667719 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
14 Hb_000683_050 0.1226574919 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
15 Hb_000909_080 0.1235004149 - - PREDICTED: inosine-5'-monophosphate dehydrogenase 2-like [Jatropha curcas]
16 Hb_180378_010 0.1238693296 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Populus euphratica]
17 Hb_000570_020 0.1245268624 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
18 Hb_000181_460 0.1256877576 - - cmp-2-keto-3-deoctulosonate (cmp-kdo) cytidyltransferase, putative [Ricinus communis]
19 Hb_001619_060 0.1274932797 - - PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic [Jatropha curcas]
20 Hb_001301_280 0.1293674597 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000258_050 Hb_000258_050 Hb_005016_010 Hb_005016_010 Hb_000258_050--Hb_005016_010 Hb_001473_170 Hb_001473_170 Hb_000258_050--Hb_001473_170 Hb_001951_060 Hb_001951_060 Hb_000258_050--Hb_001951_060 Hb_007313_040 Hb_007313_040 Hb_000258_050--Hb_007313_040 Hb_007537_030 Hb_007537_030 Hb_000258_050--Hb_007537_030 Hb_034083_020 Hb_034083_020 Hb_000258_050--Hb_034083_020 Hb_180378_010 Hb_180378_010 Hb_005016_010--Hb_180378_010 Hb_002615_030 Hb_002615_030 Hb_005016_010--Hb_002615_030 Hb_010390_010 Hb_010390_010 Hb_005016_010--Hb_010390_010 Hb_005016_010--Hb_001951_060 Hb_177215_030 Hb_177215_030 Hb_005016_010--Hb_177215_030 Hb_002311_130 Hb_002311_130 Hb_001473_170--Hb_002311_130 Hb_001473_170--Hb_010390_010 Hb_000494_030 Hb_000494_030 Hb_001473_170--Hb_000494_030 Hb_004030_060 Hb_004030_060 Hb_001473_170--Hb_004030_060 Hb_001473_170--Hb_007313_040 Hb_001301_280 Hb_001301_280 Hb_001951_060--Hb_001301_280 Hb_001951_060--Hb_034083_020 Hb_002486_080 Hb_002486_080 Hb_001951_060--Hb_002486_080 Hb_007416_070 Hb_007416_070 Hb_001951_060--Hb_007416_070 Hb_000365_010 Hb_000365_010 Hb_001951_060--Hb_000365_010 Hb_007313_040--Hb_002311_130 Hb_001998_150 Hb_001998_150 Hb_007313_040--Hb_001998_150 Hb_000167_120 Hb_000167_120 Hb_007313_040--Hb_000167_120 Hb_003517_070 Hb_003517_070 Hb_007313_040--Hb_003517_070 Hb_000025_500 Hb_000025_500 Hb_007313_040--Hb_000025_500 Hb_000570_020 Hb_000570_020 Hb_007537_030--Hb_000570_020 Hb_000157_140 Hb_000157_140 Hb_007537_030--Hb_000157_140 Hb_007537_030--Hb_004030_060 Hb_018845_010 Hb_018845_010 Hb_007537_030--Hb_018845_010 Hb_021576_070 Hb_021576_070 Hb_007537_030--Hb_021576_070 Hb_004326_010 Hb_004326_010 Hb_007537_030--Hb_004326_010 Hb_000909_080 Hb_000909_080 Hb_034083_020--Hb_000909_080 Hb_001159_010 Hb_001159_010 Hb_034083_020--Hb_001159_010 Hb_000358_020 Hb_000358_020 Hb_034083_020--Hb_000358_020 Hb_005218_080 Hb_005218_080 Hb_034083_020--Hb_005218_080 Hb_034083_020--Hb_000365_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.64068 5.39556 4.90708 13.063 0.983953 1.85761
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.90552 5.06986 2.71694 8.19231 12.4723

CAGE analysis