Hb_005218_080

Information

Type -
Description -
Location Contig5218: 65754-79747
Sequence    

Annotation

kegg
ID rcu:RCOM_0858990
description branched-chain amino acid aminotransferase, putative (EC:2.6.1.42)
nr
ID XP_012079468.1
description PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q9M401
description Branched-chain-amino-acid aminotransferase 3, chloroplastic OS=Arabidopsis thaliana GN=BCAT3 PE=1 SV=1
trembl
ID A0A067KIN6
description Branched-chain-amino-acid aminotransferase OS=Jatropha curcas GN=JCGZ_12586 PE=3 SV=1
Gene Ontology
ID GO:0009570
description branched-chain-amino-acid aminotransferase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46829: 65815-74404
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005218_080 0.0 - - PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_000358_020 0.0689883538 - - PREDICTED: uncharacterized protein C05D11.7-like [Jatropha curcas]
3 Hb_003440_020 0.0789463998 - - PREDICTED: serine protease SPPA, chloroplastic isoform X2 [Jatropha curcas]
4 Hb_000909_080 0.0811948029 - - PREDICTED: inosine-5'-monophosphate dehydrogenase 2-like [Jatropha curcas]
5 Hb_008147_080 0.0815672158 - - PREDICTED: uncharacterized protein LOC105646805 isoform X2 [Jatropha curcas]
6 Hb_171718_010 0.0872531956 - - PREDICTED: disease resistance protein At4g27190-like [Eucalyptus grandis]
7 Hb_002762_110 0.0896912519 - - conserved hypothetical protein [Ricinus communis]
8 Hb_034083_020 0.0927226504 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004644_030 0.0947984941 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
10 Hb_000035_350 0.0948378098 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
11 Hb_002615_030 0.0949536552 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A-like [Populus euphratica]
12 Hb_000365_010 0.0953821141 - - hypothetical protein POPTR_0006s10920g [Populus trichocarpa]
13 Hb_000599_210 0.0960809291 - - serine/threonine-protein kinase, putative [Ricinus communis]
14 Hb_055690_010 0.0961060751 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
15 Hb_180378_010 0.096978525 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Populus euphratica]
16 Hb_000622_290 0.0991215754 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
17 Hb_002281_020 0.1022677037 - - PREDICTED: actin-related protein 8 [Jatropha curcas]
18 Hb_005016_010 0.1031606872 - - AMP dependent CoA ligase, putative [Ricinus communis]
19 Hb_003875_030 0.1064656742 - - PREDICTED: probable plastidic glucose transporter 1 [Jatropha curcas]
20 Hb_008375_010 0.1082951123 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_005218_080 Hb_005218_080 Hb_000358_020 Hb_000358_020 Hb_005218_080--Hb_000358_020 Hb_003440_020 Hb_003440_020 Hb_005218_080--Hb_003440_020 Hb_000909_080 Hb_000909_080 Hb_005218_080--Hb_000909_080 Hb_008147_080 Hb_008147_080 Hb_005218_080--Hb_008147_080 Hb_171718_010 Hb_171718_010 Hb_005218_080--Hb_171718_010 Hb_002762_110 Hb_002762_110 Hb_005218_080--Hb_002762_110 Hb_000358_020--Hb_000909_080 Hb_055690_010 Hb_055690_010 Hb_000358_020--Hb_055690_010 Hb_000358_020--Hb_003440_020 Hb_000035_350 Hb_000035_350 Hb_000358_020--Hb_000035_350 Hb_030736_040 Hb_030736_040 Hb_000358_020--Hb_030736_040 Hb_003440_020--Hb_000909_080 Hb_003440_020--Hb_055690_010 Hb_000890_080 Hb_000890_080 Hb_003440_020--Hb_000890_080 Hb_106890_010 Hb_106890_010 Hb_003440_020--Hb_106890_010 Hb_034083_020 Hb_034083_020 Hb_000909_080--Hb_034083_020 Hb_000909_080--Hb_055690_010 Hb_000365_010 Hb_000365_010 Hb_000909_080--Hb_000365_010 Hb_001105_100 Hb_001105_100 Hb_000909_080--Hb_001105_100 Hb_004644_030 Hb_004644_030 Hb_008147_080--Hb_004644_030 Hb_008375_010 Hb_008375_010 Hb_008147_080--Hb_008375_010 Hb_001578_020 Hb_001578_020 Hb_008147_080--Hb_001578_020 Hb_000388_060 Hb_000388_060 Hb_008147_080--Hb_000388_060 Hb_000077_150 Hb_000077_150 Hb_008147_080--Hb_000077_150 Hb_171718_010--Hb_000035_350 Hb_171718_010--Hb_000358_020 Hb_171718_010--Hb_002762_110 Hb_001946_380 Hb_001946_380 Hb_171718_010--Hb_001946_380 Hb_003875_030 Hb_003875_030 Hb_171718_010--Hb_003875_030 Hb_002762_110--Hb_004644_030 Hb_000622_290 Hb_000622_290 Hb_002762_110--Hb_000622_290 Hb_000107_430 Hb_000107_430 Hb_002762_110--Hb_000107_430 Hb_003053_110 Hb_003053_110 Hb_002762_110--Hb_003053_110 Hb_002762_110--Hb_000077_150 Hb_001214_050 Hb_001214_050 Hb_002762_110--Hb_001214_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.9077 11.7835 23.524 29.453 4.05247 7.94419
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.2631 21.9277 16.2489 26.9936 44.2118

CAGE analysis