Hb_000890_080

Information

Type transcription factor
Description TF Family: C3H
Location Contig890: 97045-103589
Sequence    

Annotation

kegg
ID pop:POPTR_0010s02320g
description POPTRDRAFT_884937; hypothetical protein
nr
ID XP_011013662.1
description PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
swissprot
ID Q6NPN3
description Zinc finger CCCH domain-containing protein 58 OS=Arabidopsis thaliana GN=At5g18550 PE=2 SV=1
trembl
ID B9HSD6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s02320g PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger ccch domain-containing protein 34

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61596: 98541-98636 , PASA_asmbl_61597: 98891-103581 , PASA_asmbl_61598: 101685-101890
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000890_080 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
2 Hb_003440_020 0.0835654071 - - PREDICTED: serine protease SPPA, chloroplastic isoform X2 [Jatropha curcas]
3 Hb_004348_040 0.1008415288 - - type I inositol polyphosphate 5-phosphatase, putative [Ricinus communis]
4 Hb_002232_160 0.1079806587 - - Transaminase mtnE, putative [Ricinus communis]
5 Hb_000070_110 0.1109543982 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
6 Hb_002529_090 0.1122735659 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Hevea brasiliensis]
7 Hb_007416_110 0.1128768118 - - PREDICTED: probable cyclic nucleotide-gated ion channel 14 isoform X1 [Jatropha curcas]
8 Hb_004586_160 0.1143853297 - - PREDICTED: glucose-6-phosphate isomerase 1, chloroplastic [Jatropha curcas]
9 Hb_003355_010 0.1161917236 - - Heat shock 70 kDa protein, putative [Ricinus communis]
10 Hb_002811_200 0.1169210386 - - PREDICTED: protein IQ-DOMAIN 14-like [Jatropha curcas]
11 Hb_106890_010 0.1197619219 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
12 Hb_030736_040 0.1201976191 - - PREDICTED: uncharacterized protein LOC105638926 isoform X1 [Jatropha curcas]
13 Hb_008147_080 0.1204452403 - - PREDICTED: uncharacterized protein LOC105646805 isoform X2 [Jatropha curcas]
14 Hb_000358_020 0.1214061009 - - PREDICTED: uncharacterized protein C05D11.7-like [Jatropha curcas]
15 Hb_008375_010 0.123686022 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Pyrus x bretschneideri]
16 Hb_007441_310 0.1240013165 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
17 Hb_005218_080 0.1264808243 - - PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_000116_250 0.1273318941 - - PREDICTED: DNA mismatch repair protein MLH3 [Jatropha curcas]
19 Hb_097495_010 0.1283889606 - - PREDICTED: uncharacterized protein LOC105646805 isoform X2 [Jatropha curcas]
20 Hb_005588_100 0.1289886177 - - protein phosphatase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000890_080 Hb_000890_080 Hb_003440_020 Hb_003440_020 Hb_000890_080--Hb_003440_020 Hb_004348_040 Hb_004348_040 Hb_000890_080--Hb_004348_040 Hb_002232_160 Hb_002232_160 Hb_000890_080--Hb_002232_160 Hb_000070_110 Hb_000070_110 Hb_000890_080--Hb_000070_110 Hb_002529_090 Hb_002529_090 Hb_000890_080--Hb_002529_090 Hb_007416_110 Hb_007416_110 Hb_000890_080--Hb_007416_110 Hb_000358_020 Hb_000358_020 Hb_003440_020--Hb_000358_020 Hb_000909_080 Hb_000909_080 Hb_003440_020--Hb_000909_080 Hb_005218_080 Hb_005218_080 Hb_003440_020--Hb_005218_080 Hb_055690_010 Hb_055690_010 Hb_003440_020--Hb_055690_010 Hb_106890_010 Hb_106890_010 Hb_003440_020--Hb_106890_010 Hb_004348_040--Hb_002529_090 Hb_004348_040--Hb_003440_020 Hb_000388_060 Hb_000388_060 Hb_004348_040--Hb_000388_060 Hb_007441_310 Hb_007441_310 Hb_004348_040--Hb_007441_310 Hb_000820_140 Hb_000820_140 Hb_004348_040--Hb_000820_140 Hb_002232_160--Hb_000070_110 Hb_002232_160--Hb_003440_020 Hb_002232_160--Hb_002529_090 Hb_005015_110 Hb_005015_110 Hb_002232_160--Hb_005015_110 Hb_001564_070 Hb_001564_070 Hb_002232_160--Hb_001564_070 Hb_000130_200 Hb_000130_200 Hb_000070_110--Hb_000130_200 Hb_000070_110--Hb_002529_090 Hb_178968_080 Hb_178968_080 Hb_000070_110--Hb_178968_080 Hb_000032_600 Hb_000032_600 Hb_000070_110--Hb_000032_600 Hb_000560_040 Hb_000560_040 Hb_002529_090--Hb_000560_040 Hb_002529_090--Hb_003440_020 Hb_002529_090--Hb_000130_200 Hb_000465_150 Hb_000465_150 Hb_007416_110--Hb_000465_150 Hb_002281_020 Hb_002281_020 Hb_007416_110--Hb_002281_020 Hb_000510_170 Hb_000510_170 Hb_007416_110--Hb_000510_170 Hb_007416_110--Hb_003440_020 Hb_002486_080 Hb_002486_080 Hb_007416_110--Hb_002486_080 Hb_000638_130 Hb_000638_130 Hb_007416_110--Hb_000638_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.03669 1.52345 5.89134 4.19944 1.01177 0.679105
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.78817 2.05072 2.90641 5.73905 8.92649

CAGE analysis