Hb_002529_090

Information

Type rubber biosynthesis
Description Gene Name: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Location Contig2529: 144640-149369
Sequence    

Annotation

kegg
ID pop:POPTR_0001s09860g
description POPTRDRAFT_180213; hypothetical protein
nr
ID BAF98295.1
description 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Hevea brasiliensis]
swissprot
ID Q9M4W3
description 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Catharanthus roseus GN=ISPF PE=2 SV=1
trembl
ID A9ZN13
description 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Hevea brasiliensis GN=HbMCS PE=2 SV=1
Gene Ontology
ID GO:0008685
description 2-c-methyl-d-erythritol -cyclodiphosphate synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26458: 144689-149269 , PASA_asmbl_26459: 146852-147373
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002529_090 0.0 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Hevea brasiliensis]
2 Hb_000070_110 0.0772338003 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
3 Hb_000560_040 0.0881898332 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
4 Hb_003440_020 0.089152784 - - PREDICTED: serine protease SPPA, chloroplastic isoform X2 [Jatropha curcas]
5 Hb_004348_040 0.1067511233 - - type I inositol polyphosphate 5-phosphatase, putative [Ricinus communis]
6 Hb_000130_200 0.1080503773 - - PREDICTED: putative serine/threonine-protein kinase isoform X3 [Jatropha curcas]
7 Hb_002232_160 0.1096965779 - - Transaminase mtnE, putative [Ricinus communis]
8 Hb_000388_060 0.1114376157 - - fructokinase [Manihot esculenta]
9 Hb_000890_080 0.1122735659 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
10 Hb_008375_010 0.112479968 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Pyrus x bretschneideri]
11 Hb_005218_080 0.1137204687 - - PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_005305_020 0.1139137771 - - PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]
13 Hb_001373_130 0.1184104457 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002150_020 0.1188882481 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
15 Hb_032631_070 0.1192747369 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
16 Hb_001405_080 0.1197447467 - - PREDICTED: acylamino-acid-releasing enzyme [Jatropha curcas]
17 Hb_055690_010 0.1201899193 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
18 Hb_000358_020 0.1212590534 - - PREDICTED: uncharacterized protein C05D11.7-like [Jatropha curcas]
19 Hb_000210_080 0.1219289974 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
20 Hb_002281_020 0.1221002033 - - PREDICTED: actin-related protein 8 [Jatropha curcas]

Gene co-expression network

sample Hb_002529_090 Hb_002529_090 Hb_000070_110 Hb_000070_110 Hb_002529_090--Hb_000070_110 Hb_000560_040 Hb_000560_040 Hb_002529_090--Hb_000560_040 Hb_003440_020 Hb_003440_020 Hb_002529_090--Hb_003440_020 Hb_004348_040 Hb_004348_040 Hb_002529_090--Hb_004348_040 Hb_000130_200 Hb_000130_200 Hb_002529_090--Hb_000130_200 Hb_002232_160 Hb_002232_160 Hb_002529_090--Hb_002232_160 Hb_000070_110--Hb_000130_200 Hb_178968_080 Hb_178968_080 Hb_000070_110--Hb_178968_080 Hb_000070_110--Hb_002232_160 Hb_000032_600 Hb_000032_600 Hb_000070_110--Hb_000032_600 Hb_000890_080 Hb_000890_080 Hb_000070_110--Hb_000890_080 Hb_055690_010 Hb_055690_010 Hb_000560_040--Hb_055690_010 Hb_000560_040--Hb_003440_020 Hb_002075_030 Hb_002075_030 Hb_000560_040--Hb_002075_030 Hb_032631_070 Hb_032631_070 Hb_000560_040--Hb_032631_070 Hb_002053_010 Hb_002053_010 Hb_000560_040--Hb_002053_010 Hb_000358_020 Hb_000358_020 Hb_003440_020--Hb_000358_020 Hb_000909_080 Hb_000909_080 Hb_003440_020--Hb_000909_080 Hb_005218_080 Hb_005218_080 Hb_003440_020--Hb_005218_080 Hb_003440_020--Hb_055690_010 Hb_003440_020--Hb_000890_080 Hb_106890_010 Hb_106890_010 Hb_003440_020--Hb_106890_010 Hb_004348_040--Hb_000890_080 Hb_004348_040--Hb_003440_020 Hb_000388_060 Hb_000388_060 Hb_004348_040--Hb_000388_060 Hb_007441_310 Hb_007441_310 Hb_004348_040--Hb_007441_310 Hb_000820_140 Hb_000820_140 Hb_004348_040--Hb_000820_140 Hb_000622_060 Hb_000622_060 Hb_000130_200--Hb_000622_060 Hb_000130_200--Hb_178968_080 Hb_000130_200--Hb_000032_600 Hb_033152_110 Hb_033152_110 Hb_000130_200--Hb_033152_110 Hb_002232_160--Hb_000890_080 Hb_002232_160--Hb_003440_020 Hb_005015_110 Hb_005015_110 Hb_002232_160--Hb_005015_110 Hb_001564_070 Hb_001564_070 Hb_002232_160--Hb_001564_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.02439 16.5055 36.0639 30.8692 4.02177 5.07342
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.77 19.9432 9.86298 33.601 65.4089

CAGE analysis