Hb_004348_040

Information

Type -
Description -
Location Contig4348: 46072-50847
Sequence    

Annotation

kegg
ID rcu:RCOM_0731120
description type I inositol polyphosphate 5-phosphatase, putative (EC:1.3.1.74)
nr
ID XP_002520447.1
description type I inositol polyphosphate 5-phosphatase, putative [Ricinus communis]
swissprot
ID Q9LR47
description Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 OS=Arabidopsis thaliana GN=CVP2 PE=1 SV=2
trembl
ID B9S378
description Type I inositol polyphosphate 5-phosphatase, putative OS=Ricinus communis GN=RCOM_0731120 PE=4 SV=1
Gene Ontology
ID GO:0046856
description type i inositol -trisphosphate 5-phosphatase cvp2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42431: 45997-48258
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004348_040 0.0 - - type I inositol polyphosphate 5-phosphatase, putative [Ricinus communis]
2 Hb_000890_080 0.1008415288 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
3 Hb_002529_090 0.1067511233 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Hevea brasiliensis]
4 Hb_003440_020 0.1082726154 - - PREDICTED: serine protease SPPA, chloroplastic isoform X2 [Jatropha curcas]
5 Hb_000388_060 0.1153406899 - - fructokinase [Manihot esculenta]
6 Hb_007441_310 0.1213226225 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
7 Hb_000820_140 0.122774963 - - histone H4 [Zea mays]
8 Hb_000210_080 0.1276626349 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
9 Hb_187247_020 0.1310181773 - - PREDICTED: uncharacterized protein LOC101220469 [Cucumis sativus]
10 Hb_000397_150 0.1311964344 - - PREDICTED: probable flavin-containing monooxygenase 1 [Jatropha curcas]
11 Hb_008147_080 0.1324306915 - - PREDICTED: uncharacterized protein LOC105646805 isoform X2 [Jatropha curcas]
12 Hb_000560_040 0.133710487 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
13 Hb_032631_070 0.1347359112 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
14 Hb_000116_250 0.134751846 - - PREDICTED: DNA mismatch repair protein MLH3 [Jatropha curcas]
15 Hb_000566_010 0.1349784762 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
16 Hb_000070_110 0.1352586007 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
17 Hb_000307_070 0.1366674097 - - protein kinase, putative [Ricinus communis]
18 Hb_003355_010 0.1374878369 - - Heat shock 70 kDa protein, putative [Ricinus communis]
19 Hb_002900_110 0.1389823069 - - amino acid transporter, putative [Ricinus communis]
20 Hb_002075_030 0.1392906813 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_004348_040 Hb_004348_040 Hb_000890_080 Hb_000890_080 Hb_004348_040--Hb_000890_080 Hb_002529_090 Hb_002529_090 Hb_004348_040--Hb_002529_090 Hb_003440_020 Hb_003440_020 Hb_004348_040--Hb_003440_020 Hb_000388_060 Hb_000388_060 Hb_004348_040--Hb_000388_060 Hb_007441_310 Hb_007441_310 Hb_004348_040--Hb_007441_310 Hb_000820_140 Hb_000820_140 Hb_004348_040--Hb_000820_140 Hb_000890_080--Hb_003440_020 Hb_002232_160 Hb_002232_160 Hb_000890_080--Hb_002232_160 Hb_000070_110 Hb_000070_110 Hb_000890_080--Hb_000070_110 Hb_000890_080--Hb_002529_090 Hb_007416_110 Hb_007416_110 Hb_000890_080--Hb_007416_110 Hb_002529_090--Hb_000070_110 Hb_000560_040 Hb_000560_040 Hb_002529_090--Hb_000560_040 Hb_002529_090--Hb_003440_020 Hb_000130_200 Hb_000130_200 Hb_002529_090--Hb_000130_200 Hb_002529_090--Hb_002232_160 Hb_000358_020 Hb_000358_020 Hb_003440_020--Hb_000358_020 Hb_000909_080 Hb_000909_080 Hb_003440_020--Hb_000909_080 Hb_005218_080 Hb_005218_080 Hb_003440_020--Hb_005218_080 Hb_055690_010 Hb_055690_010 Hb_003440_020--Hb_055690_010 Hb_106890_010 Hb_106890_010 Hb_003440_020--Hb_106890_010 Hb_001789_200 Hb_001789_200 Hb_000388_060--Hb_001789_200 Hb_002053_010 Hb_002053_010 Hb_000388_060--Hb_002053_010 Hb_008147_080 Hb_008147_080 Hb_000388_060--Hb_008147_080 Hb_000983_070 Hb_000983_070 Hb_000388_060--Hb_000983_070 Hb_001124_180 Hb_001124_180 Hb_000388_060--Hb_001124_180 Hb_001898_180 Hb_001898_180 Hb_000388_060--Hb_001898_180 Hb_008375_010 Hb_008375_010 Hb_007441_310--Hb_008375_010 Hb_032631_070 Hb_032631_070 Hb_007441_310--Hb_032631_070 Hb_000585_110 Hb_000585_110 Hb_007441_310--Hb_000585_110 Hb_000397_150 Hb_000397_150 Hb_007441_310--Hb_000397_150 Hb_007441_310--Hb_055690_010 Hb_001195_770 Hb_001195_770 Hb_007441_310--Hb_001195_770 Hb_001322_230 Hb_001322_230 Hb_000820_140--Hb_001322_230 Hb_068194_010 Hb_068194_010 Hb_000820_140--Hb_068194_010 Hb_000307_070 Hb_000307_070 Hb_000820_140--Hb_000307_070 Hb_000676_020 Hb_000676_020 Hb_000820_140--Hb_000676_020 Hb_001587_040 Hb_001587_040 Hb_000820_140--Hb_001587_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.899273 0.969972 4.27428 2.95936 0.714658 0.234861
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.70324 1.75575 0.997156 3.00102 5.67357

CAGE analysis