Hb_000676_020

Information

Type -
Description -
Location Contig676: 11519-14919
Sequence    

Annotation

kegg
ID rcu:RCOM_1712710
description hydroxyacyl-ACP Dehydrase (EC:4.2.1.-)
nr
ID XP_012086368.1
description PREDICTED: uncharacterized protein LOC105645386 [Jatropha curcas]
swissprot
ID Q8DI01
description 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Thermosynechococcus elongatus (strain BP-1) GN=fabZ PE=3 SV=1
trembl
ID A0A067JPG4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22886 PE=3 SV=1
Gene Ontology
ID GO:0005618
description hydroxyacyl-acp dehydrase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53537: 11165-14928
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000676_020 0.0 - - PREDICTED: uncharacterized protein LOC105645386 [Jatropha curcas]
2 Hb_068194_010 0.0832281369 - - hypothetical protein POPTR_0010s23740g [Populus trichocarpa]
3 Hb_027506_040 0.1066942705 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
4 Hb_002498_160 0.1067116784 - - PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]
5 Hb_009851_010 0.1097882486 - - PREDICTED: beta-amylase 3, chloroplastic-like [Jatropha curcas]
6 Hb_000820_140 0.1101443128 - - histone H4 [Zea mays]
7 Hb_002205_140 0.1114633002 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b [Jatropha curcas]
8 Hb_000926_080 0.1118200625 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
9 Hb_001124_190 0.1129989907 - - conserved hypothetical protein [Ricinus communis]
10 Hb_015967_030 0.12092113 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription repressor VAL1 isoform X1 [Jatropha curcas]
11 Hb_005914_050 0.1211316122 - - PREDICTED: 50S ribosomal protein L28, chloroplastic [Jatropha curcas]
12 Hb_007217_010 0.1272526465 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
13 Hb_001102_050 0.1291703248 - - PREDICTED: fatty-acid-binding protein 3 [Jatropha curcas]
14 Hb_006445_020 0.130618961 - - hypothetical protein L484_026741 [Morus notabilis]
15 Hb_001322_230 0.1309329739 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
16 Hb_002986_090 0.1319798518 - - PREDICTED: methionine aminopeptidase 1D, chloroplastic/mitochondrial [Jatropha curcas]
17 Hb_000200_300 0.133806041 - - PREDICTED: uncharacterized protein LOC105636926 [Jatropha curcas]
18 Hb_000364_170 0.1340877361 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase CLF [Jatropha curcas]
19 Hb_000057_110 0.1347543184 - - PREDICTED: kinesin-13A [Jatropha curcas]
20 Hb_000608_390 0.1353461629 - - hypothetical protein B456_010G140700 [Gossypium raimondii]

Gene co-expression network

sample Hb_000676_020 Hb_000676_020 Hb_068194_010 Hb_068194_010 Hb_000676_020--Hb_068194_010 Hb_027506_040 Hb_027506_040 Hb_000676_020--Hb_027506_040 Hb_002498_160 Hb_002498_160 Hb_000676_020--Hb_002498_160 Hb_009851_010 Hb_009851_010 Hb_000676_020--Hb_009851_010 Hb_000820_140 Hb_000820_140 Hb_000676_020--Hb_000820_140 Hb_002205_140 Hb_002205_140 Hb_000676_020--Hb_002205_140 Hb_068194_010--Hb_000820_140 Hb_006445_020 Hb_006445_020 Hb_068194_010--Hb_006445_020 Hb_068194_010--Hb_009851_010 Hb_001102_050 Hb_001102_050 Hb_068194_010--Hb_001102_050 Hb_001322_230 Hb_001322_230 Hb_068194_010--Hb_001322_230 Hb_000926_080 Hb_000926_080 Hb_027506_040--Hb_000926_080 Hb_000200_300 Hb_000200_300 Hb_027506_040--Hb_000200_300 Hb_011671_260 Hb_011671_260 Hb_027506_040--Hb_011671_260 Hb_000398_170 Hb_000398_170 Hb_027506_040--Hb_000398_170 Hb_003602_060 Hb_003602_060 Hb_027506_040--Hb_003602_060 Hb_000684_030 Hb_000684_030 Hb_027506_040--Hb_000684_030 Hb_169209_010 Hb_169209_010 Hb_002498_160--Hb_169209_010 Hb_000473_050 Hb_000473_050 Hb_002498_160--Hb_000473_050 Hb_000608_390 Hb_000608_390 Hb_002498_160--Hb_000608_390 Hb_002044_020 Hb_002044_020 Hb_002498_160--Hb_002044_020 Hb_002986_090 Hb_002986_090 Hb_002498_160--Hb_002986_090 Hb_027402_020 Hb_027402_020 Hb_009851_010--Hb_027402_020 Hb_000331_420 Hb_000331_420 Hb_009851_010--Hb_000331_420 Hb_009851_010--Hb_002498_160 Hb_009851_010--Hb_001102_050 Hb_000820_140--Hb_001322_230 Hb_000307_070 Hb_000307_070 Hb_000820_140--Hb_000307_070 Hb_001587_040 Hb_001587_040 Hb_000820_140--Hb_001587_040 Hb_004348_040 Hb_004348_040 Hb_000820_140--Hb_004348_040 Hb_000364_170 Hb_000364_170 Hb_002205_140--Hb_000364_170 Hb_019654_050 Hb_019654_050 Hb_002205_140--Hb_019654_050 Hb_011381_040 Hb_011381_040 Hb_002205_140--Hb_011381_040 Hb_013405_070 Hb_013405_070 Hb_002205_140--Hb_013405_070 Hb_002205_140--Hb_027506_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.20967 3.96324 41.4051 18.5145 2.62775 3.01573
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.44478 12.7606 8.97872 7.58343 23.5023

CAGE analysis