Hb_002205_140

Information

Type transcription factor
Description TF Family: bZIP
Location Contig2205: 118875-122364
Sequence    

Annotation

kegg
ID rcu:RCOM_0689740
description Transcription factor RF2b, putative
nr
ID XP_012091145.1
description PREDICTED: transcription factor RF2b [Jatropha curcas]
swissprot
ID Q6S4P4
description Transcription factor RF2b OS=Oryza sativa subsp. japonica GN=RF2b PE=1 SV=2
trembl
ID A0A067JCX3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03323 PE=4 SV=1
Gene Ontology
ID GO:0003700
description transcription factor rf2b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22724: 118883-120447 , PASA_asmbl_22725: 120488-120639
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002205_140 0.0 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b [Jatropha curcas]
2 Hb_000676_020 0.1114633002 - - PREDICTED: uncharacterized protein LOC105645386 [Jatropha curcas]
3 Hb_000364_170 0.1121316781 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase CLF [Jatropha curcas]
4 Hb_019654_050 0.1175804092 - - PREDICTED: prolyl endopeptidase [Jatropha curcas]
5 Hb_011381_040 0.122283688 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Jatropha curcas]
6 Hb_013405_070 0.125369411 - - ferric-chelate reductase, putative [Ricinus communis]
7 Hb_027506_040 0.1265797556 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
8 Hb_006445_020 0.1294211984 - - hypothetical protein L484_026741 [Morus notabilis]
9 Hb_011828_040 0.1311995176 - - PREDICTED: uncharacterized protein LOC105642173 isoform X2 [Jatropha curcas]
10 Hb_000200_300 0.13278771 - - PREDICTED: uncharacterized protein LOC105636926 [Jatropha curcas]
11 Hb_003835_110 0.1337053528 - - PREDICTED: nucleobase-ascorbate transporter 11 isoform X1 [Jatropha curcas]
12 Hb_068194_010 0.1342035862 - - hypothetical protein POPTR_0010s23740g [Populus trichocarpa]
13 Hb_002871_040 0.1342948839 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
14 Hb_027402_020 0.1347399496 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02 [Jatropha curcas]
15 Hb_003271_040 0.1374878514 - - PREDICTED: SEC14 cytosolic factor [Jatropha curcas]
16 Hb_000057_110 0.1385900374 - - PREDICTED: kinesin-13A [Jatropha curcas]
17 Hb_009851_010 0.138944652 - - PREDICTED: beta-amylase 3, chloroplastic-like [Jatropha curcas]
18 Hb_002783_220 0.139139573 - - PREDICTED: uncharacterized protein LOC105635342 isoform X1 [Jatropha curcas]
19 Hb_001102_050 0.1407199615 - - PREDICTED: fatty-acid-binding protein 3 [Jatropha curcas]
20 Hb_006588_190 0.1408105867 - - PREDICTED: ataxin-3 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_002205_140 Hb_002205_140 Hb_000676_020 Hb_000676_020 Hb_002205_140--Hb_000676_020 Hb_000364_170 Hb_000364_170 Hb_002205_140--Hb_000364_170 Hb_019654_050 Hb_019654_050 Hb_002205_140--Hb_019654_050 Hb_011381_040 Hb_011381_040 Hb_002205_140--Hb_011381_040 Hb_013405_070 Hb_013405_070 Hb_002205_140--Hb_013405_070 Hb_027506_040 Hb_027506_040 Hb_002205_140--Hb_027506_040 Hb_068194_010 Hb_068194_010 Hb_000676_020--Hb_068194_010 Hb_000676_020--Hb_027506_040 Hb_002498_160 Hb_002498_160 Hb_000676_020--Hb_002498_160 Hb_009851_010 Hb_009851_010 Hb_000676_020--Hb_009851_010 Hb_000820_140 Hb_000820_140 Hb_000676_020--Hb_000820_140 Hb_000364_170--Hb_011381_040 Hb_000057_110 Hb_000057_110 Hb_000364_170--Hb_000057_110 Hb_000200_300 Hb_000200_300 Hb_000364_170--Hb_000200_300 Hb_006775_120 Hb_006775_120 Hb_000364_170--Hb_006775_120 Hb_002783_220 Hb_002783_220 Hb_000364_170--Hb_002783_220 Hb_005754_040 Hb_005754_040 Hb_000364_170--Hb_005754_040 Hb_001799_160 Hb_001799_160 Hb_019654_050--Hb_001799_160 Hb_000120_890 Hb_000120_890 Hb_019654_050--Hb_000120_890 Hb_003835_110 Hb_003835_110 Hb_019654_050--Hb_003835_110 Hb_003498_100 Hb_003498_100 Hb_019654_050--Hb_003498_100 Hb_019654_050--Hb_011381_040 Hb_019654_050--Hb_002783_220 Hb_011381_040--Hb_003835_110 Hb_006588_190 Hb_006588_190 Hb_011381_040--Hb_006588_190 Hb_002871_040 Hb_002871_040 Hb_011381_040--Hb_002871_040 Hb_000029_400 Hb_000029_400 Hb_011381_040--Hb_000029_400 Hb_002027_320 Hb_002027_320 Hb_011381_040--Hb_002027_320 Hb_000800_020 Hb_000800_020 Hb_013405_070--Hb_000800_020 Hb_011671_340 Hb_011671_340 Hb_013405_070--Hb_011671_340 Hb_008725_270 Hb_008725_270 Hb_013405_070--Hb_008725_270 Hb_001232_090 Hb_001232_090 Hb_013405_070--Hb_001232_090 Hb_000589_170 Hb_000589_170 Hb_013405_070--Hb_000589_170 Hb_003894_030 Hb_003894_030 Hb_013405_070--Hb_003894_030 Hb_000926_080 Hb_000926_080 Hb_027506_040--Hb_000926_080 Hb_027506_040--Hb_000200_300 Hb_011671_260 Hb_011671_260 Hb_027506_040--Hb_011671_260 Hb_000398_170 Hb_000398_170 Hb_027506_040--Hb_000398_170 Hb_003602_060 Hb_003602_060 Hb_027506_040--Hb_003602_060 Hb_000684_030 Hb_000684_030 Hb_027506_040--Hb_000684_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.85441 2.07327 18.2547 9.22776 1.9738 1.35738
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.30827 5.31809 5.30274 3.97896 6.01195

CAGE analysis