Hb_000820_140

Information

Type -
Description -
Location Contig820: 132379-132690
Sequence    

Annotation

kegg
ID ppp:PHYPADRAFT_152862
description HFO1503; histone H4
nr
ID ACG30677.1
description histone H4 [Zea mays]
swissprot
ID P0CG89
description Histone H4 OS=Glycine max PE=3 SV=1
trembl
ID Q5NSW2
description Histone H4 (Fragment) OS=Fragaria ananassa PE=2 SV=1
Gene Ontology
ID GO:0000786
description histone h4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59574: 132314-133104
cDNA
(Sanger)
(ID:Location)		 013_E21.ab1: 132318-132851 , 022_C17.ab1: 132320-132867 , 023_L04.ab1: 132319-132763 , 025_F21.ab1: 132318-132852 , 036_N10.ab1: 132318-132851 , 036_N13.ab1: 132318-132823 , 046_K19.ab1: 132318-132986

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000820_140 0.0 - - histone H4 [Zea mays]
2 Hb_001322_230 0.0921645642 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
3 Hb_068194_010 0.1004735782 - - hypothetical protein POPTR_0010s23740g [Populus trichocarpa]
4 Hb_000307_070 0.1099473494 - - protein kinase, putative [Ricinus communis]
5 Hb_000676_020 0.1101443128 - - PREDICTED: uncharacterized protein LOC105645386 [Jatropha curcas]
6 Hb_001587_040 0.1162594305 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
7 Hb_004348_040 0.122774963 - - type I inositol polyphosphate 5-phosphatase, putative [Ricinus communis]
8 Hb_015967_030 0.1280589137 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription repressor VAL1 isoform X1 [Jatropha curcas]
9 Hb_000116_250 0.1288092266 - - PREDICTED: DNA mismatch repair protein MLH3 [Jatropha curcas]
10 Hb_169209_010 0.1290334333 - - PREDICTED: porphobilinogen deaminase, chloroplastic [Jatropha curcas]
11 Hb_001390_100 0.129049487 - - PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic [Jatropha curcas]
12 Hb_002498_160 0.1293288287 - - PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]
13 Hb_000189_130 0.1305563921 - - PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Jatropha curcas]
14 Hb_001124_190 0.1310513308 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002075_030 0.1324738333 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
16 Hb_007199_020 0.1331379489 - - hypothetical protein CICLE_v10028570mg [Citrus clementina]
17 Hb_005917_020 0.1348412318 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
18 Hb_009851_010 0.1364994218 - - PREDICTED: beta-amylase 3, chloroplastic-like [Jatropha curcas]
19 Hb_001711_120 0.1367165007 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
20 Hb_000388_060 0.1396893771 - - fructokinase [Manihot esculenta]

Gene co-expression network

sample Hb_000820_140 Hb_000820_140 Hb_001322_230 Hb_001322_230 Hb_000820_140--Hb_001322_230 Hb_068194_010 Hb_068194_010 Hb_000820_140--Hb_068194_010 Hb_000307_070 Hb_000307_070 Hb_000820_140--Hb_000307_070 Hb_000676_020 Hb_000676_020 Hb_000820_140--Hb_000676_020 Hb_001587_040 Hb_001587_040 Hb_000820_140--Hb_001587_040 Hb_004348_040 Hb_004348_040 Hb_000820_140--Hb_004348_040 Hb_002053_010 Hb_002053_010 Hb_001322_230--Hb_002053_010 Hb_001711_120 Hb_001711_120 Hb_001322_230--Hb_001711_120 Hb_003602_060 Hb_003602_060 Hb_001322_230--Hb_003602_060 Hb_000560_040 Hb_000560_040 Hb_001322_230--Hb_000560_040 Hb_001863_070 Hb_001863_070 Hb_001322_230--Hb_001863_070 Hb_068194_010--Hb_000676_020 Hb_006445_020 Hb_006445_020 Hb_068194_010--Hb_006445_020 Hb_009851_010 Hb_009851_010 Hb_068194_010--Hb_009851_010 Hb_001102_050 Hb_001102_050 Hb_068194_010--Hb_001102_050 Hb_068194_010--Hb_001322_230 Hb_000307_070--Hb_001587_040 Hb_000334_050 Hb_000334_050 Hb_000307_070--Hb_000334_050 Hb_000189_130 Hb_000189_130 Hb_000307_070--Hb_000189_130 Hb_005917_020 Hb_005917_020 Hb_000307_070--Hb_005917_020 Hb_000310_060 Hb_000310_060 Hb_000307_070--Hb_000310_060 Hb_027506_040 Hb_027506_040 Hb_000676_020--Hb_027506_040 Hb_002498_160 Hb_002498_160 Hb_000676_020--Hb_002498_160 Hb_000676_020--Hb_009851_010 Hb_002205_140 Hb_002205_140 Hb_000676_020--Hb_002205_140 Hb_001587_040--Hb_000310_060 Hb_003398_040 Hb_003398_040 Hb_001587_040--Hb_003398_040 Hb_005527_060 Hb_005527_060 Hb_001587_040--Hb_005527_060 Hb_000996_080 Hb_000996_080 Hb_001587_040--Hb_000996_080 Hb_001390_100 Hb_001390_100 Hb_001587_040--Hb_001390_100 Hb_000890_080 Hb_000890_080 Hb_004348_040--Hb_000890_080 Hb_002529_090 Hb_002529_090 Hb_004348_040--Hb_002529_090 Hb_003440_020 Hb_003440_020 Hb_004348_040--Hb_003440_020 Hb_000388_060 Hb_000388_060 Hb_004348_040--Hb_000388_060 Hb_007441_310 Hb_007441_310 Hb_004348_040--Hb_007441_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
104.692 146.599 1260.29 500.607 76.8521 101.424
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
322.085 439.338 277.739 480.876 1014.24

CAGE analysis