Hb_000334_050

Information

Type -
Description -
Location Contig334: 22474-26404
Sequence    

Annotation

kegg
ID pop:POPTR_0001s41870g
description hypothetical protein
nr
ID XP_012070667.1
description PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
swissprot
ID Q1ECE0
description Vesicle-associated protein 4-1 OS=Arabidopsis thaliana GN=PVA41 PE=2 SV=1
trembl
ID A0A067KS42
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00709 PE=4 SV=1
Gene Ontology
ID GO:0005789
description vesicle-associated protein 4-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35022: 22593-26246
cDNA
(Sanger)
(ID:Location)		 029_A07.ab1: 24615-26201 , 038_K06.ab1: 23167-26201 , 052_L12.ab1: 23123-26201

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000334_050 0.0 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
2 Hb_004223_270 0.0871898019 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
3 Hb_022425_050 0.09317242 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
4 Hb_000933_110 0.0938151121 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]
5 Hb_027445_100 0.098015276 - - PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Jatropha curcas]
6 Hb_005731_100 0.1007230826 - - monovalent cation:proton antiporter, putative [Ricinus communis]
7 Hb_000327_200 0.105709929 - - glutathione-s-transferase omega, putative [Ricinus communis]
8 Hb_000446_040 0.1071786737 - - PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
9 Hb_000307_070 0.1111700636 - - protein kinase, putative [Ricinus communis]
10 Hb_004648_030 0.115342198 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
11 Hb_004052_110 0.1155650889 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
12 Hb_001865_010 0.1164334887 transcription factor TF Family: B3 hypothetical protein RCOM_0465210 [Ricinus communis]
13 Hb_001124_140 0.1185033536 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]
14 Hb_000310_060 0.1202459685 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
15 Hb_004545_120 0.1210779757 - - PREDICTED: uncharacterized protein LOC105647604 [Jatropha curcas]
16 Hb_000270_280 0.1254836348 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
17 Hb_000011_560 0.1256556726 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]
18 Hb_003664_030 0.1281321555 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
19 Hb_001307_100 0.1291435509 - - calmodulin binding protein, putative [Ricinus communis]
20 Hb_004672_020 0.1303895342 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]

Gene co-expression network

sample Hb_000334_050 Hb_000334_050 Hb_004223_270 Hb_004223_270 Hb_000334_050--Hb_004223_270 Hb_022425_050 Hb_022425_050 Hb_000334_050--Hb_022425_050 Hb_000933_110 Hb_000933_110 Hb_000334_050--Hb_000933_110 Hb_027445_100 Hb_027445_100 Hb_000334_050--Hb_027445_100 Hb_005731_100 Hb_005731_100 Hb_000334_050--Hb_005731_100 Hb_000327_200 Hb_000327_200 Hb_000334_050--Hb_000327_200 Hb_000005_100 Hb_000005_100 Hb_004223_270--Hb_000005_100 Hb_004223_270--Hb_000933_110 Hb_004223_270--Hb_022425_050 Hb_001649_030 Hb_001649_030 Hb_004223_270--Hb_001649_030 Hb_005116_100 Hb_005116_100 Hb_004223_270--Hb_005116_100 Hb_001865_010 Hb_001865_010 Hb_022425_050--Hb_001865_010 Hb_022425_050--Hb_005731_100 Hb_001124_140 Hb_001124_140 Hb_022425_050--Hb_001124_140 Hb_001969_130 Hb_001969_130 Hb_022425_050--Hb_001969_130 Hb_000260_160 Hb_000260_160 Hb_000933_110--Hb_000260_160 Hb_000446_040 Hb_000446_040 Hb_000933_110--Hb_000446_040 Hb_004346_040 Hb_004346_040 Hb_000933_110--Hb_004346_040 Hb_000933_110--Hb_027445_100 Hb_027445_100--Hb_001649_030 Hb_002928_030 Hb_002928_030 Hb_027445_100--Hb_002928_030 Hb_011476_030 Hb_011476_030 Hb_027445_100--Hb_011476_030 Hb_027445_100--Hb_004223_270 Hb_009288_040 Hb_009288_040 Hb_027445_100--Hb_009288_040 Hb_005731_100--Hb_001124_140 Hb_000046_480 Hb_000046_480 Hb_005731_100--Hb_000046_480 Hb_001153_100 Hb_001153_100 Hb_005731_100--Hb_001153_100 Hb_001754_120 Hb_001754_120 Hb_005731_100--Hb_001754_120 Hb_000069_360 Hb_000069_360 Hb_000327_200--Hb_000069_360 Hb_000310_060 Hb_000310_060 Hb_000327_200--Hb_000310_060 Hb_000996_080 Hb_000996_080 Hb_000327_200--Hb_000996_080 Hb_003020_250 Hb_003020_250 Hb_000327_200--Hb_003020_250 Hb_001587_040 Hb_001587_040 Hb_000327_200--Hb_001587_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.33 24.8994 46.4128 22.1562 2.39169 3.48103
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.98499 7.69183 6.30798 12.8225 47.7666

CAGE analysis