Hb_000046_480

Information

Type -
Description -
Location Contig46: 372912-378634
Sequence    

Annotation

kegg
ID rcu:RCOM_0680290
description acyl-CoA binding protein, putative
nr
ID XP_012069388.1
description PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]
swissprot
ID Q9MA55
description Acyl-CoA-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=ACBP4 PE=1 SV=1
trembl
ID A0A067L679
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02008 PE=4 SV=1
Gene Ontology
ID GO:0005829
description acyl- -binding domain-containing protein 4-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43655: 372850-378605
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_480 0.0 - - PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]
2 Hb_005731_100 0.0967036702 - - monovalent cation:proton antiporter, putative [Ricinus communis]
3 Hb_033152_110 0.1032597777 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN3 [Jatropha curcas]
4 Hb_000414_080 0.129681329 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
5 Hb_001124_140 0.1307763863 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]
6 Hb_006736_050 0.1308110824 - - hypothetical protein POPTR_0006s04450g [Populus trichocarpa]
7 Hb_001433_150 0.1312646266 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000566_010 0.1333509513 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
9 Hb_001754_120 0.1336048201 - - PREDICTED: probable protein phosphatase 2C 40 [Jatropha curcas]
10 Hb_002044_160 0.1340493779 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 1 [Jatropha curcas]
11 Hb_002374_450 0.1351285465 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
12 Hb_000210_080 0.1376652508 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
13 Hb_000310_060 0.1377817491 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
14 Hb_000996_080 0.1384366663 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
15 Hb_004672_020 0.1390661712 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
16 Hb_003053_070 0.1403637776 - - PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic [Jatropha curcas]
17 Hb_022425_050 0.1412815232 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
18 Hb_010632_020 0.1427308104 - - hypothetical protein POPTR_0006s185902g, partial [Populus trichocarpa]
19 Hb_001153_100 0.1428925573 transcription factor TF Family: HB PREDICTED: homeobox protein HD1 [Jatropha curcas]
20 Hb_158092_100 0.1439721391 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]

Gene co-expression network

sample Hb_000046_480 Hb_000046_480 Hb_005731_100 Hb_005731_100 Hb_000046_480--Hb_005731_100 Hb_033152_110 Hb_033152_110 Hb_000046_480--Hb_033152_110 Hb_000414_080 Hb_000414_080 Hb_000046_480--Hb_000414_080 Hb_001124_140 Hb_001124_140 Hb_000046_480--Hb_001124_140 Hb_006736_050 Hb_006736_050 Hb_000046_480--Hb_006736_050 Hb_001433_150 Hb_001433_150 Hb_000046_480--Hb_001433_150 Hb_005731_100--Hb_001124_140 Hb_022425_050 Hb_022425_050 Hb_005731_100--Hb_022425_050 Hb_001153_100 Hb_001153_100 Hb_005731_100--Hb_001153_100 Hb_000334_050 Hb_000334_050 Hb_005731_100--Hb_000334_050 Hb_001754_120 Hb_001754_120 Hb_005731_100--Hb_001754_120 Hb_000115_360 Hb_000115_360 Hb_033152_110--Hb_000115_360 Hb_003226_200 Hb_003226_200 Hb_033152_110--Hb_003226_200 Hb_000622_060 Hb_000622_060 Hb_033152_110--Hb_000622_060 Hb_000130_200 Hb_000130_200 Hb_033152_110--Hb_000130_200 Hb_033152_110--Hb_001754_120 Hb_000487_370 Hb_000487_370 Hb_000414_080--Hb_000487_370 Hb_000510_190 Hb_000510_190 Hb_000414_080--Hb_000510_190 Hb_002249_080 Hb_002249_080 Hb_000414_080--Hb_002249_080 Hb_000422_080 Hb_000422_080 Hb_000414_080--Hb_000422_080 Hb_003175_070 Hb_003175_070 Hb_000414_080--Hb_003175_070 Hb_002374_450 Hb_002374_450 Hb_000414_080--Hb_002374_450 Hb_001969_130 Hb_001969_130 Hb_001124_140--Hb_001969_130 Hb_001124_140--Hb_022425_050 Hb_002026_030 Hb_002026_030 Hb_001124_140--Hb_002026_030 Hb_001865_010 Hb_001865_010 Hb_001124_140--Hb_001865_010 Hb_004129_010 Hb_004129_010 Hb_001124_140--Hb_004129_010 Hb_189003_070 Hb_189003_070 Hb_006736_050--Hb_189003_070 Hb_036388_010 Hb_036388_010 Hb_006736_050--Hb_036388_010 Hb_006120_060 Hb_006120_060 Hb_006736_050--Hb_006120_060 Hb_000768_150 Hb_000768_150 Hb_006736_050--Hb_000768_150 Hb_000120_740 Hb_000120_740 Hb_006736_050--Hb_000120_740 Hb_000283_140 Hb_000283_140 Hb_006736_050--Hb_000283_140 Hb_001180_010 Hb_001180_010 Hb_001433_150--Hb_001180_010 Hb_002028_110 Hb_002028_110 Hb_001433_150--Hb_002028_110 Hb_001433_150--Hb_001153_100 Hb_002641_120 Hb_002641_120 Hb_001433_150--Hb_002641_120 Hb_001544_050 Hb_001544_050 Hb_001433_150--Hb_001544_050 Hb_002759_220 Hb_002759_220 Hb_001433_150--Hb_002759_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.699939 2.65925 8.04673 7.09392 0.423066 0.514117
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.95487 0.697548 1.61711 3.34535 10.2371

CAGE analysis