Hb_001754_120

Information

Type -
Description -
Location Contig1754: 93078-97216
Sequence    

Annotation

kegg
ID rcu:RCOM_0680870
description protein phosphatase-2c, putative (EC:3.1.3.16)
nr
ID XP_012083928.1
description PREDICTED: probable protein phosphatase 2C 40 [Jatropha curcas]
swissprot
ID Q9LUS8
description Probable protein phosphatase 2C 40 OS=Arabidopsis thaliana GN=At3g16560 PE=2 SV=1
trembl
ID A0A067JYD7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18868 PE=4 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 40

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16797: 93416-95067 , PASA_asmbl_16798: 93312-93654 , PASA_asmbl_16799: 94221-94691 , PASA_asmbl_16800: 95145-95706 , PASA_asmbl_16801: 95744-97131
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001754_120 0.0 - - PREDICTED: probable protein phosphatase 2C 40 [Jatropha curcas]
2 Hb_033152_110 0.1030046197 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN3 [Jatropha curcas]
3 Hb_000032_600 0.1060843884 - - PREDICTED: B2 protein [Jatropha curcas]
4 Hb_000979_260 0.1086758591 - - ARF GTPase activator, putative [Ricinus communis]
5 Hb_005731_100 0.1092078775 - - monovalent cation:proton antiporter, putative [Ricinus communis]
6 Hb_000622_060 0.1149577862 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
7 Hb_001124_140 0.1149887013 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]
8 Hb_067664_010 0.1169163426 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
9 Hb_000115_360 0.1304849507 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
10 Hb_001054_060 0.1333350582 - - PREDICTED: dihydropyrimidine dehydrogenase [NADP(+)] [Jatropha curcas]
11 Hb_000046_480 0.1336048201 - - PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]
12 Hb_112064_010 0.1337033662 - - PREDICTED: inositol-phosphate phosphatase [Jatropha curcas]
13 Hb_003226_200 0.1387287324 - - magnesium/proton exchanger, putative [Ricinus communis]
14 Hb_004129_010 0.1394340332 - - aspartate aminotransferase, putative [Ricinus communis]
15 Hb_006736_050 0.1406663125 - - hypothetical protein POPTR_0006s04450g [Populus trichocarpa]
16 Hb_001153_100 0.1413451695 transcription factor TF Family: HB PREDICTED: homeobox protein HD1 [Jatropha curcas]
17 Hb_000753_110 0.1431550888 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X6 [Jatropha curcas]
18 Hb_005568_050 0.1469970029 - - ascorbate peroxidase [Hevea brasiliensis]
19 Hb_005276_070 0.1486887035 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
20 Hb_000130_200 0.1488704913 - - PREDICTED: putative serine/threonine-protein kinase isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_001754_120 Hb_001754_120 Hb_033152_110 Hb_033152_110 Hb_001754_120--Hb_033152_110 Hb_000032_600 Hb_000032_600 Hb_001754_120--Hb_000032_600 Hb_000979_260 Hb_000979_260 Hb_001754_120--Hb_000979_260 Hb_005731_100 Hb_005731_100 Hb_001754_120--Hb_005731_100 Hb_000622_060 Hb_000622_060 Hb_001754_120--Hb_000622_060 Hb_001124_140 Hb_001124_140 Hb_001754_120--Hb_001124_140 Hb_000115_360 Hb_000115_360 Hb_033152_110--Hb_000115_360 Hb_003226_200 Hb_003226_200 Hb_033152_110--Hb_003226_200 Hb_033152_110--Hb_000622_060 Hb_000130_200 Hb_000130_200 Hb_033152_110--Hb_000130_200 Hb_000046_480 Hb_000046_480 Hb_033152_110--Hb_000046_480 Hb_067664_010 Hb_067664_010 Hb_000032_600--Hb_067664_010 Hb_001054_060 Hb_001054_060 Hb_000032_600--Hb_001054_060 Hb_000977_150 Hb_000977_150 Hb_000032_600--Hb_000977_150 Hb_178968_080 Hb_178968_080 Hb_000032_600--Hb_178968_080 Hb_000032_600--Hb_000130_200 Hb_000979_260--Hb_003226_200 Hb_000979_260--Hb_033152_110 Hb_004724_170 Hb_004724_170 Hb_000979_260--Hb_004724_170 Hb_011242_010 Hb_011242_010 Hb_000979_260--Hb_011242_010 Hb_000979_260--Hb_000622_060 Hb_005731_100--Hb_001124_140 Hb_022425_050 Hb_022425_050 Hb_005731_100--Hb_022425_050 Hb_005731_100--Hb_000046_480 Hb_001153_100 Hb_001153_100 Hb_005731_100--Hb_001153_100 Hb_000334_050 Hb_000334_050 Hb_005731_100--Hb_000334_050 Hb_000622_060--Hb_000115_360 Hb_000622_060--Hb_000130_200 Hb_000622_060--Hb_003226_200 Hb_000622_060--Hb_000032_600 Hb_004129_010 Hb_004129_010 Hb_000622_060--Hb_004129_010 Hb_001969_130 Hb_001969_130 Hb_001124_140--Hb_001969_130 Hb_001124_140--Hb_022425_050 Hb_002026_030 Hb_002026_030 Hb_001124_140--Hb_002026_030 Hb_001865_010 Hb_001865_010 Hb_001124_140--Hb_001865_010 Hb_001124_140--Hb_004129_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.408867 3.12353 6.43664 6.59544 0.00855979 0.256764
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.20363 0.488824 1.24985 4.70431 8.78134

CAGE analysis