Hb_000979_260

Information

Type -
Description -
Location Contig979: 278512-281708
Sequence    

Annotation

kegg
ID rcu:RCOM_0630050
description ARF GTPase activator, putative
nr
ID XP_002527798.1
description ARF GTPase activator, putative [Ricinus communis]
swissprot
ID Q8LFN9
description Probable ADP-ribosylation factor GTPase-activating protein AGD13 OS=Arabidopsis thaliana GN=AGD13 PE=2 SV=1
trembl
ID B9SP79
description ARF GTPase activator, putative OS=Ricinus communis GN=RCOM_0630050 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64323: 278512-281685
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000979_260 0.0 - - ARF GTPase activator, putative [Ricinus communis]
2 Hb_003226_200 0.1071169875 - - magnesium/proton exchanger, putative [Ricinus communis]
3 Hb_001754_120 0.1086758591 - - PREDICTED: probable protein phosphatase 2C 40 [Jatropha curcas]
4 Hb_033152_110 0.1264955753 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN3 [Jatropha curcas]
5 Hb_004724_170 0.1371531617 - - PREDICTED: rho GTPase-activating protein 1 [Jatropha curcas]
6 Hb_011242_010 0.1378559148 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 [Jatropha curcas]
7 Hb_000622_060 0.1395580418 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
8 Hb_112064_010 0.143165868 - - PREDICTED: inositol-phosphate phosphatase [Jatropha curcas]
9 Hb_000115_360 0.1463906319 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
10 Hb_000032_600 0.1485367987 - - PREDICTED: B2 protein [Jatropha curcas]
11 Hb_003053_070 0.1498412367 - - PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic [Jatropha curcas]
12 Hb_002909_080 0.1505914583 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
13 Hb_002759_220 0.1529836461 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
14 Hb_005731_100 0.1547324826 - - monovalent cation:proton antiporter, putative [Ricinus communis]
15 Hb_003778_020 0.1548775464 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
16 Hb_000130_200 0.1554075172 - - PREDICTED: putative serine/threonine-protein kinase isoform X3 [Jatropha curcas]
17 Hb_000054_030 0.157917496 - - hypothetical protein POPTR_0010s17680g [Populus trichocarpa]
18 Hb_003783_050 0.1597287575 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000008_060 0.1650777115 - - protein binding protein, putative [Ricinus communis]
20 Hb_161396_010 0.1655763298 - - hypothetical protein F383_26394 [Gossypium arboreum]

Gene co-expression network

sample Hb_000979_260 Hb_000979_260 Hb_003226_200 Hb_003226_200 Hb_000979_260--Hb_003226_200 Hb_001754_120 Hb_001754_120 Hb_000979_260--Hb_001754_120 Hb_033152_110 Hb_033152_110 Hb_000979_260--Hb_033152_110 Hb_004724_170 Hb_004724_170 Hb_000979_260--Hb_004724_170 Hb_011242_010 Hb_011242_010 Hb_000979_260--Hb_011242_010 Hb_000622_060 Hb_000622_060 Hb_000979_260--Hb_000622_060 Hb_003226_200--Hb_033152_110 Hb_003226_200--Hb_000622_060 Hb_000115_360 Hb_000115_360 Hb_003226_200--Hb_000115_360 Hb_002759_220 Hb_002759_220 Hb_003226_200--Hb_002759_220 Hb_000008_060 Hb_000008_060 Hb_003226_200--Hb_000008_060 Hb_001754_120--Hb_033152_110 Hb_000032_600 Hb_000032_600 Hb_001754_120--Hb_000032_600 Hb_005731_100 Hb_005731_100 Hb_001754_120--Hb_005731_100 Hb_001754_120--Hb_000622_060 Hb_001124_140 Hb_001124_140 Hb_001754_120--Hb_001124_140 Hb_033152_110--Hb_000115_360 Hb_033152_110--Hb_000622_060 Hb_000130_200 Hb_000130_200 Hb_033152_110--Hb_000130_200 Hb_000046_480 Hb_000046_480 Hb_033152_110--Hb_000046_480 Hb_004041_050 Hb_004041_050 Hb_004724_170--Hb_004041_050 Hb_097335_010 Hb_097335_010 Hb_004724_170--Hb_097335_010 Hb_004724_170--Hb_011242_010 Hb_001180_010 Hb_001180_010 Hb_004724_170--Hb_001180_010 Hb_001433_150 Hb_001433_150 Hb_004724_170--Hb_001433_150 Hb_003145_010 Hb_003145_010 Hb_011242_010--Hb_003145_010 Hb_114917_010 Hb_114917_010 Hb_011242_010--Hb_114917_010 Hb_005183_040 Hb_005183_040 Hb_011242_010--Hb_005183_040 Hb_011242_010--Hb_097335_010 Hb_030827_010 Hb_030827_010 Hb_011242_010--Hb_030827_010 Hb_000622_060--Hb_000115_360 Hb_000622_060--Hb_000130_200 Hb_000622_060--Hb_000032_600 Hb_004129_010 Hb_004129_010 Hb_000622_060--Hb_004129_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.814624 33.5245 79.3208 83.2795 0.660722 1.37525
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.70107 6.10489 29.0523 45.1291 123.787

CAGE analysis