Hb_000008_060

Information

Type -
Description -
Location Contig8: 55539-61884
Sequence    

Annotation

kegg
ID rcu:RCOM_0033580
description protein binding protein, putative
nr
ID XP_002529928.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q55874
description Uncharacterized protein sll0103 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0103 PE=3 SV=1
trembl
ID B9SVA9
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_0033580 PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58648: 55681-61884 , PASA_asmbl_58652: 57095-59777
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000008_060 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_003226_200 0.1092487957 - - magnesium/proton exchanger, putative [Ricinus communis]
3 Hb_003778_020 0.109455205 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
4 Hb_000622_060 0.1274565986 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
5 Hb_000130_200 0.1388292518 - - PREDICTED: putative serine/threonine-protein kinase isoform X3 [Jatropha curcas]
6 Hb_000115_360 0.1388606626 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
7 Hb_000849_120 0.1625588451 - - PREDICTED: linoleate 9S-lipoxygenase 6-like [Jatropha curcas]
8 Hb_033152_110 0.1627930652 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN3 [Jatropha curcas]
9 Hb_000979_260 0.1650777115 - - ARF GTPase activator, putative [Ricinus communis]
10 Hb_000054_030 0.1666526058 - - hypothetical protein POPTR_0010s17680g [Populus trichocarpa]
11 Hb_012851_020 0.1687677764 - - PREDICTED: aminodeoxychorismate synthase, chloroplastic isoform X2 [Jatropha curcas]
12 Hb_002486_020 0.1693854715 - - ATP binding protein, putative [Ricinus communis]
13 Hb_026314_030 0.1697448221 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
14 Hb_001269_070 0.1702393466 - - double-stranded RNA binding protein, putative [Ricinus communis]
15 Hb_000386_050 0.1720088552 - - PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Jatropha curcas]
16 Hb_161396_010 0.1732568945 - - hypothetical protein F383_26394 [Gossypium arboreum]
17 Hb_000110_060 0.1739520293 - - PREDICTED: uncharacterized protein LOC105636258 [Jatropha curcas]
18 Hb_000070_110 0.1739784674 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
19 Hb_000941_120 0.1741871519 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
20 Hb_003783_050 0.1743165028 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000008_060 Hb_000008_060 Hb_003226_200 Hb_003226_200 Hb_000008_060--Hb_003226_200 Hb_003778_020 Hb_003778_020 Hb_000008_060--Hb_003778_020 Hb_000622_060 Hb_000622_060 Hb_000008_060--Hb_000622_060 Hb_000130_200 Hb_000130_200 Hb_000008_060--Hb_000130_200 Hb_000115_360 Hb_000115_360 Hb_000008_060--Hb_000115_360 Hb_000849_120 Hb_000849_120 Hb_000008_060--Hb_000849_120 Hb_033152_110 Hb_033152_110 Hb_003226_200--Hb_033152_110 Hb_003226_200--Hb_000622_060 Hb_003226_200--Hb_000115_360 Hb_000979_260 Hb_000979_260 Hb_003226_200--Hb_000979_260 Hb_002759_220 Hb_002759_220 Hb_003226_200--Hb_002759_220 Hb_001916_150 Hb_001916_150 Hb_003778_020--Hb_001916_150 Hb_003783_050 Hb_003783_050 Hb_003778_020--Hb_003783_050 Hb_003778_020--Hb_000130_200 Hb_031330_020 Hb_031330_020 Hb_003778_020--Hb_031330_020 Hb_003778_020--Hb_000622_060 Hb_000622_060--Hb_000115_360 Hb_000622_060--Hb_000130_200 Hb_000622_060--Hb_033152_110 Hb_000032_600 Hb_000032_600 Hb_000622_060--Hb_000032_600 Hb_004129_010 Hb_004129_010 Hb_000622_060--Hb_004129_010 Hb_000070_110 Hb_000070_110 Hb_000130_200--Hb_000070_110 Hb_178968_080 Hb_178968_080 Hb_000130_200--Hb_178968_080 Hb_000130_200--Hb_000032_600 Hb_000130_200--Hb_033152_110 Hb_002529_090 Hb_002529_090 Hb_000130_200--Hb_002529_090 Hb_000115_360--Hb_033152_110 Hb_002391_320 Hb_002391_320 Hb_000115_360--Hb_002391_320 Hb_000115_360--Hb_004129_010 Hb_112064_010 Hb_112064_010 Hb_000115_360--Hb_112064_010 Hb_000110_060 Hb_000110_060 Hb_000849_120--Hb_000110_060 Hb_000684_390 Hb_000684_390 Hb_000849_120--Hb_000684_390 Hb_004326_010 Hb_004326_010 Hb_000849_120--Hb_004326_010 Hb_000181_460 Hb_000181_460 Hb_000849_120--Hb_000181_460 Hb_009252_010 Hb_009252_010 Hb_000849_120--Hb_009252_010 Hb_005348_110 Hb_005348_110 Hb_000849_120--Hb_005348_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.275911 4.08531 6.43369 11.9884 0.172886 0.253331
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.593199 4.44083 4.45729 5.91296 16.9273

CAGE analysis