Hb_003778_020

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig3778: 25881-38950
Sequence    

Annotation

kegg
ID cit:102623211
description putative disease resistance protein RGA1-like
nr
ID XP_012065986.1
description PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
swissprot
ID Q7XA42
description Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2
trembl
ID A0A067JQ82
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003778_020 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
2 Hb_000008_060 0.109455205 - - protein binding protein, putative [Ricinus communis]
3 Hb_001916_150 0.1112600216 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3 [Vitis vinifera]
4 Hb_003783_050 0.1156567088 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000130_200 0.12219629 - - PREDICTED: putative serine/threonine-protein kinase isoform X3 [Jatropha curcas]
6 Hb_031330_020 0.124794693 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
7 Hb_000622_060 0.1261561983 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
8 Hb_003226_200 0.1279392787 - - magnesium/proton exchanger, putative [Ricinus communis]
9 Hb_030312_030 0.1316480182 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
10 Hb_026314_030 0.1401000625 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
11 Hb_033152_110 0.1403176436 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN3 [Jatropha curcas]
12 Hb_000106_030 0.142788293 - - amino acid transporter, putative [Ricinus communis]
13 Hb_000977_150 0.1432639503 - - latex cyanogenic beta glucosidase [Hevea brasiliensis]
14 Hb_000768_150 0.1433416533 - - PREDICTED: glycine-rich protein A3-like [Fragaria vesca subsp. vesca]
15 Hb_000849_120 0.1433910208 - - PREDICTED: linoleate 9S-lipoxygenase 6-like [Jatropha curcas]
16 Hb_001054_060 0.1436002321 - - PREDICTED: dihydropyrimidine dehydrogenase [NADP(+)] [Jatropha curcas]
17 Hb_000115_360 0.1438821774 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
18 Hb_004326_010 0.1457411711 - - cationic amino acid transporter, putative [Ricinus communis]
19 Hb_000300_680 0.1477162624 - - PREDICTED: uncharacterized protein LOC105632625 isoform X1 [Jatropha curcas]
20 Hb_001365_010 0.1486794671 - - hypothetical protein JCGZ_02762 [Jatropha curcas]

Gene co-expression network

sample Hb_003778_020 Hb_003778_020 Hb_000008_060 Hb_000008_060 Hb_003778_020--Hb_000008_060 Hb_001916_150 Hb_001916_150 Hb_003778_020--Hb_001916_150 Hb_003783_050 Hb_003783_050 Hb_003778_020--Hb_003783_050 Hb_000130_200 Hb_000130_200 Hb_003778_020--Hb_000130_200 Hb_031330_020 Hb_031330_020 Hb_003778_020--Hb_031330_020 Hb_000622_060 Hb_000622_060 Hb_003778_020--Hb_000622_060 Hb_003226_200 Hb_003226_200 Hb_000008_060--Hb_003226_200 Hb_000008_060--Hb_000622_060 Hb_000008_060--Hb_000130_200 Hb_000115_360 Hb_000115_360 Hb_000008_060--Hb_000115_360 Hb_000849_120 Hb_000849_120 Hb_000008_060--Hb_000849_120 Hb_001916_150--Hb_003783_050 Hb_000300_680 Hb_000300_680 Hb_001916_150--Hb_000300_680 Hb_003226_250 Hb_003226_250 Hb_001916_150--Hb_003226_250 Hb_030312_030 Hb_030312_030 Hb_001916_150--Hb_030312_030 Hb_114917_010 Hb_114917_010 Hb_001916_150--Hb_114917_010 Hb_000941_120 Hb_000941_120 Hb_003783_050--Hb_000941_120 Hb_036388_010 Hb_036388_010 Hb_003783_050--Hb_036388_010 Hb_003783_050--Hb_030312_030 Hb_035834_010 Hb_035834_010 Hb_003783_050--Hb_035834_010 Hb_000445_370 Hb_000445_370 Hb_003783_050--Hb_000445_370 Hb_000070_110 Hb_000070_110 Hb_000130_200--Hb_000070_110 Hb_000130_200--Hb_000622_060 Hb_178968_080 Hb_178968_080 Hb_000130_200--Hb_178968_080 Hb_000032_600 Hb_000032_600 Hb_000130_200--Hb_000032_600 Hb_033152_110 Hb_033152_110 Hb_000130_200--Hb_033152_110 Hb_002529_090 Hb_002529_090 Hb_000130_200--Hb_002529_090 Hb_031330_020--Hb_000300_680 Hb_031330_020--Hb_001916_150 Hb_000975_050 Hb_000975_050 Hb_031330_020--Hb_000975_050 Hb_134813_010 Hb_134813_010 Hb_031330_020--Hb_134813_010 Hb_011053_020 Hb_011053_020 Hb_031330_020--Hb_011053_020 Hb_000622_060--Hb_000115_360 Hb_000622_060--Hb_033152_110 Hb_000622_060--Hb_003226_200 Hb_000622_060--Hb_000032_600 Hb_004129_010 Hb_004129_010 Hb_000622_060--Hb_004129_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0288167 0.181497 0.304513 0.644057 0.0127285 0.0569713
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0616985 0.121379 0.208761 0.337111 1.03476

CAGE analysis