Hb_031330_020

Information

Type -
Description -
Location Contig31330: 6540-8080
Sequence    

Annotation

kegg
ID pop:POPTR_0006s13330g
description hypothetical protein
nr
ID XP_012082298.1
description PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K9V9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16469 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33177: 6555-6721 , PASA_asmbl_33178: 6800-7537
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031330_020 0.0 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
2 Hb_000300_680 0.0942404944 - - PREDICTED: uncharacterized protein LOC105632625 isoform X1 [Jatropha curcas]
3 Hb_001916_150 0.1240282196 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3 [Vitis vinifera]
4 Hb_003778_020 0.124794693 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
5 Hb_000975_050 0.1268144845 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
6 Hb_134813_010 0.1344894586 - - aldo/keto reductase, putative [Ricinus communis]
7 Hb_011053_020 0.1377387586 - - lipoic acid synthetase, putative [Ricinus communis]
8 Hb_000616_030 0.1378300101 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
9 Hb_001124_230 0.1402466501 - - PREDICTED: divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic [Jatropha curcas]
10 Hb_000252_180 0.1423153858 - - Glutamate--glyoxylate aminotransferase 2 [Morus notabilis]
11 Hb_000805_010 0.1437915088 - - PREDICTED: uncharacterized protein LOC105629931 [Jatropha curcas]
12 Hb_000329_080 0.1438306546 - - PREDICTED: transketolase, chloroplastic [Jatropha curcas]
13 Hb_002235_110 0.1447058442 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
14 Hb_000866_050 0.1477380378 - - phosphate transporter [Manihot esculenta]
15 Hb_063866_010 0.1505864745 - - PREDICTED: uncharacterized protein LOC105632605 [Jatropha curcas]
16 Hb_026314_030 0.1508506456 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
17 Hb_183963_010 0.1518333021 - - core region of GTP cyclohydrolase I family protein [Populus trichocarpa]
18 Hb_000163_110 0.1529541306 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]
19 Hb_000054_030 0.1547401041 - - hypothetical protein POPTR_0010s17680g [Populus trichocarpa]
20 Hb_000395_010 0.1555806943 - - alpha/beta hydrolase domain containing protein 1,3, putative [Ricinus communis]

Gene co-expression network

sample Hb_031330_020 Hb_031330_020 Hb_000300_680 Hb_000300_680 Hb_031330_020--Hb_000300_680 Hb_001916_150 Hb_001916_150 Hb_031330_020--Hb_001916_150 Hb_003778_020 Hb_003778_020 Hb_031330_020--Hb_003778_020 Hb_000975_050 Hb_000975_050 Hb_031330_020--Hb_000975_050 Hb_134813_010 Hb_134813_010 Hb_031330_020--Hb_134813_010 Hb_011053_020 Hb_011053_020 Hb_031330_020--Hb_011053_020 Hb_000616_030 Hb_000616_030 Hb_000300_680--Hb_000616_030 Hb_000329_080 Hb_000329_080 Hb_000300_680--Hb_000329_080 Hb_000300_680--Hb_001916_150 Hb_000163_110 Hb_000163_110 Hb_000300_680--Hb_000163_110 Hb_000300_680--Hb_000975_050 Hb_003783_050 Hb_003783_050 Hb_001916_150--Hb_003783_050 Hb_001916_150--Hb_003778_020 Hb_003226_250 Hb_003226_250 Hb_001916_150--Hb_003226_250 Hb_030312_030 Hb_030312_030 Hb_001916_150--Hb_030312_030 Hb_114917_010 Hb_114917_010 Hb_001916_150--Hb_114917_010 Hb_000008_060 Hb_000008_060 Hb_003778_020--Hb_000008_060 Hb_003778_020--Hb_003783_050 Hb_000130_200 Hb_000130_200 Hb_003778_020--Hb_000130_200 Hb_000622_060 Hb_000622_060 Hb_003778_020--Hb_000622_060 Hb_000966_040 Hb_000966_040 Hb_000975_050--Hb_000966_040 Hb_010098_040 Hb_010098_040 Hb_000975_050--Hb_010098_040 Hb_000834_080 Hb_000834_080 Hb_000975_050--Hb_000834_080 Hb_000441_050 Hb_000441_050 Hb_000975_050--Hb_000441_050 Hb_005181_120 Hb_005181_120 Hb_000975_050--Hb_005181_120 Hb_005977_060 Hb_005977_060 Hb_000975_050--Hb_005977_060 Hb_000035_020 Hb_000035_020 Hb_134813_010--Hb_000035_020 Hb_134813_010--Hb_000300_680 Hb_002305_010 Hb_002305_010 Hb_134813_010--Hb_002305_010 Hb_000866_050 Hb_000866_050 Hb_134813_010--Hb_000866_050 Hb_134813_010--Hb_003778_020 Hb_183963_010 Hb_183963_010 Hb_011053_020--Hb_183963_010 Hb_007002_010 Hb_007002_010 Hb_011053_020--Hb_007002_010 Hb_000012_010 Hb_000012_010 Hb_011053_020--Hb_000012_010 Hb_000023_210 Hb_000023_210 Hb_011053_020--Hb_000023_210 Hb_011053_020--Hb_000866_050 Hb_000189_520 Hb_000189_520 Hb_011053_020--Hb_000189_520
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.180708 0.522427 1.69272 2.93463 0.04174 0.1531
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.355808 0.458049 0.764052 1.34136 7.44348

CAGE analysis