Hb_007002_010

Information

Type -
Description -
Location Contig7002: 8892-13039
Sequence    

Annotation

kegg
ID gmx:100799701
description dnaJ homolog subfamily B member 11-like
nr
ID XP_012082868.1
description PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
swissprot
ID Q9LZK5
description DnaJ protein ERDJ3B OS=Arabidopsis thaliana GN=ERDJ3B PE=1 SV=1
trembl
ID A0A067JWC0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14007 PE=4 SV=1
Gene Ontology
ID GO:0051082
description dnaj protein erdj3b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54807: 8756-13025
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007002_010 0.0 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
2 Hb_000352_220 0.0821632581 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
3 Hb_000890_110 0.0964018907 - - PREDICTED: GTP-binding protein OBGC, chloroplastic [Populus euphratica]
4 Hb_000495_080 0.1074457673 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
5 Hb_000683_080 0.1101430235 - - hypothetical protein EUGRSUZ_G013602, partial [Eucalyptus grandis]
6 Hb_000023_210 0.1122180498 - - PREDICTED: protein TIC 55, chloroplastic [Jatropha curcas]
7 Hb_011053_020 0.1155771459 - - lipoic acid synthetase, putative [Ricinus communis]
8 Hb_000402_170 0.1208757143 - - PREDICTED: glutamate--glyoxylate aminotransferase 2 [Jatropha curcas]
9 Hb_000300_020 0.1212170726 - - PREDICTED: grpE protein homolog, mitochondrial [Jatropha curcas]
10 Hb_002681_080 0.1225852012 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
11 Hb_000038_020 0.1424897418 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
12 Hb_003226_190 0.1454137579 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]
13 Hb_000866_050 0.1461016661 - - phosphate transporter [Manihot esculenta]
14 Hb_158144_020 0.146361292 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Vitis vinifera]
15 Hb_003427_080 0.1464777793 - - PREDICTED: probable alanine--tRNA ligase, chloroplastic [Jatropha curcas]
16 Hb_000189_250 0.14773695 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
17 Hb_000189_520 0.1490288096 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
18 Hb_000521_090 0.1509305219 - - PREDICTED: RING-H2 finger protein ATL5 isoform X1 [Jatropha curcas]
19 Hb_000056_090 0.1518477933 - - UDP-galactose transporter 3 isoform 1 [Theobroma cacao]
20 Hb_001369_700 0.1519558054 - - -

Gene co-expression network

sample Hb_007002_010 Hb_007002_010 Hb_000352_220 Hb_000352_220 Hb_007002_010--Hb_000352_220 Hb_000890_110 Hb_000890_110 Hb_007002_010--Hb_000890_110 Hb_000495_080 Hb_000495_080 Hb_007002_010--Hb_000495_080 Hb_000683_080 Hb_000683_080 Hb_007002_010--Hb_000683_080 Hb_000023_210 Hb_000023_210 Hb_007002_010--Hb_000023_210 Hb_011053_020 Hb_011053_020 Hb_007002_010--Hb_011053_020 Hb_000352_220--Hb_000495_080 Hb_003226_190 Hb_003226_190 Hb_000352_220--Hb_003226_190 Hb_000300_020 Hb_000300_020 Hb_000352_220--Hb_000300_020 Hb_002671_130 Hb_002671_130 Hb_000352_220--Hb_002671_130 Hb_000114_150 Hb_000114_150 Hb_000352_220--Hb_000114_150 Hb_000890_110--Hb_000683_080 Hb_158144_020 Hb_158144_020 Hb_000890_110--Hb_158144_020 Hb_000038_020 Hb_000038_020 Hb_000890_110--Hb_000038_020 Hb_000890_110--Hb_000352_220 Hb_168031_020 Hb_168031_020 Hb_000890_110--Hb_168031_020 Hb_000495_080--Hb_003226_190 Hb_008511_140 Hb_008511_140 Hb_000495_080--Hb_008511_140 Hb_000189_250 Hb_000189_250 Hb_000495_080--Hb_000189_250 Hb_000640_260 Hb_000640_260 Hb_000495_080--Hb_000640_260 Hb_000683_080--Hb_000495_080 Hb_000683_080--Hb_000352_220 Hb_000683_080--Hb_003226_190 Hb_000189_520 Hb_000189_520 Hb_000683_080--Hb_000189_520 Hb_000402_170 Hb_000402_170 Hb_000023_210--Hb_000402_170 Hb_002304_180 Hb_002304_180 Hb_000023_210--Hb_002304_180 Hb_000023_210--Hb_000300_020 Hb_000023_210--Hb_011053_020 Hb_000684_280 Hb_000684_280 Hb_000023_210--Hb_000684_280 Hb_183963_010 Hb_183963_010 Hb_011053_020--Hb_183963_010 Hb_000012_010 Hb_000012_010 Hb_011053_020--Hb_000012_010 Hb_000866_050 Hb_000866_050 Hb_011053_020--Hb_000866_050 Hb_011053_020--Hb_000189_520
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.74911 6.04969 18.1431 33.5095 9.96066 10.2896
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.2111 10.8499 14.255 17.3449 133.618

CAGE analysis