Hb_158144_020

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig158144: 6897-9277
Sequence    

Annotation

kegg
ID vvi:100256787
description putative disease resistance protein RGA3
nr
ID XP_010659529.1
description PREDICTED: putative disease resistance protein RGA3 [Vitis vinifera]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID F6H4R4
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0027g01400 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13936: 8235-8553
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_158144_020 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Vitis vinifera]
2 Hb_000058_080 0.113963253 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
3 Hb_000890_110 0.124381527 - - PREDICTED: GTP-binding protein OBGC, chloroplastic [Populus euphratica]
4 Hb_000189_250 0.1280132123 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
5 Hb_000640_260 0.1352097212 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
6 Hb_000402_170 0.1372447244 - - PREDICTED: glutamate--glyoxylate aminotransferase 2 [Jatropha curcas]
7 Hb_166127_030 0.1394082249 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_036790_120 0.1409411267 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
9 Hb_001792_030 0.1421341468 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Jatropha curcas]
10 Hb_000934_020 0.1425933536 - - PREDICTED: uncharacterized protein LOC105629153 [Jatropha curcas]
11 Hb_021313_010 0.1441710473 - - hypothetical protein POPTR_0010s24380g [Populus trichocarpa]
12 Hb_007002_010 0.146361292 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
13 Hb_000352_220 0.1499697523 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
14 Hb_000866_050 0.1530964501 - - phosphate transporter [Manihot esculenta]
15 Hb_000495_080 0.1550974511 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
16 Hb_021409_190 0.1551535628 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
17 Hb_000667_140 0.156956496 - - PREDICTED: uridine kinase-like protein 3 isoform X1 [Jatropha curcas]
18 Hb_024399_020 0.1570525679 - - electron transporter, putative [Ricinus communis]
19 Hb_000012_010 0.1578963904 - - hypothetical protein JCGZ_07709 [Jatropha curcas]
20 Hb_001890_010 0.1579636218 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]

Gene co-expression network

sample Hb_158144_020 Hb_158144_020 Hb_000058_080 Hb_000058_080 Hb_158144_020--Hb_000058_080 Hb_000890_110 Hb_000890_110 Hb_158144_020--Hb_000890_110 Hb_000189_250 Hb_000189_250 Hb_158144_020--Hb_000189_250 Hb_000640_260 Hb_000640_260 Hb_158144_020--Hb_000640_260 Hb_000402_170 Hb_000402_170 Hb_158144_020--Hb_000402_170 Hb_166127_030 Hb_166127_030 Hb_158144_020--Hb_166127_030 Hb_000866_050 Hb_000866_050 Hb_000058_080--Hb_000866_050 Hb_001792_030 Hb_001792_030 Hb_000058_080--Hb_001792_030 Hb_003581_290 Hb_003581_290 Hb_000058_080--Hb_003581_290 Hb_000594_100 Hb_000594_100 Hb_000058_080--Hb_000594_100 Hb_003124_120 Hb_003124_120 Hb_000058_080--Hb_003124_120 Hb_007002_010 Hb_007002_010 Hb_000890_110--Hb_007002_010 Hb_000683_080 Hb_000683_080 Hb_000890_110--Hb_000683_080 Hb_000038_020 Hb_000038_020 Hb_000890_110--Hb_000038_020 Hb_000352_220 Hb_000352_220 Hb_000890_110--Hb_000352_220 Hb_168031_020 Hb_168031_020 Hb_000890_110--Hb_168031_020 Hb_000934_020 Hb_000934_020 Hb_000189_250--Hb_000934_020 Hb_000189_250--Hb_166127_030 Hb_000189_250--Hb_000640_260 Hb_036790_120 Hb_036790_120 Hb_000189_250--Hb_036790_120 Hb_007576_150 Hb_007576_150 Hb_000189_250--Hb_007576_150 Hb_000495_080 Hb_000495_080 Hb_000189_250--Hb_000495_080 Hb_001890_010 Hb_001890_010 Hb_000640_260--Hb_001890_010 Hb_021409_190 Hb_021409_190 Hb_000640_260--Hb_021409_190 Hb_000640_260--Hb_166127_030 Hb_000640_260--Hb_000934_020 Hb_003029_140 Hb_003029_140 Hb_000640_260--Hb_003029_140 Hb_003427_080 Hb_003427_080 Hb_000402_170--Hb_003427_080 Hb_000402_170--Hb_036790_120 Hb_000023_210 Hb_000023_210 Hb_000402_170--Hb_000023_210 Hb_000300_020 Hb_000300_020 Hb_000402_170--Hb_000300_020 Hb_001723_030 Hb_001723_030 Hb_000402_170--Hb_001723_030 Hb_002304_180 Hb_002304_180 Hb_000402_170--Hb_002304_180 Hb_002671_130 Hb_002671_130 Hb_166127_030--Hb_002671_130 Hb_000803_240 Hb_000803_240 Hb_166127_030--Hb_000803_240 Hb_166127_030--Hb_000934_020 Hb_166127_030--Hb_021409_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0809919 0.136012 0.905575 0.476925 0.158388 0.359634
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.172315 0.290524 0.439771 0.640061 3.22588

CAGE analysis