Hb_000300_020

Information

Type -
Description -
Location Contig300: 15166-18662
Sequence    

Annotation

kegg
ID tcc:TCM_025770
description Co-chaperone GrpE family protein
nr
ID XP_012070349.1
description PREDICTED: grpE protein homolog, mitochondrial [Jatropha curcas]
swissprot
ID Q8DJB3
description Protein GrpE OS=Thermosynechococcus elongatus (strain BP-1) GN=grpE PE=3 SV=1
trembl
ID A0A067L6A9
description GrpE protein homolog OS=Jatropha curcas GN=JCGZ_02644 PE=3 SV=1
Gene Ontology
ID GO:0005759
description grpe protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31530: 14932-18529
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_020 0.0 - - PREDICTED: grpE protein homolog, mitochondrial [Jatropha curcas]
2 Hb_009687_020 0.0960134131 - - hypothetical protein JCGZ_10323 [Jatropha curcas]
3 Hb_000352_220 0.0993910814 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
4 Hb_126917_010 0.102461516 - - PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]
5 Hb_000023_210 0.1040287083 - - PREDICTED: protein TIC 55, chloroplastic [Jatropha curcas]
6 Hb_003171_030 0.1073371315 - - PREDICTED: grpE protein homolog, mitochondrial [Jatropha curcas]
7 Hb_000816_200 0.1099308304 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
8 Hb_000402_170 0.1128943216 - - PREDICTED: glutamate--glyoxylate aminotransferase 2 [Jatropha curcas]
9 Hb_000834_080 0.1197709721 - - PREDICTED: uncharacterized protein LOC105637718 [Jatropha curcas]
10 Hb_007002_010 0.1212170726 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
11 Hb_000056_090 0.1234431222 - - UDP-galactose transporter 3 isoform 1 [Theobroma cacao]
12 Hb_006198_130 0.1266932877 - - PREDICTED: uncharacterized protein LOC105644406 [Jatropha curcas]
13 Hb_000189_450 0.128657948 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
14 Hb_000107_590 0.1304749683 - - PREDICTED: tricalbin-3 [Jatropha curcas]
15 Hb_121089_040 0.130494984 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
16 Hb_000059_270 0.1307397731 - - superoxide dismutase [Fe], chloroplastic [Jatropha curcas]
17 Hb_016461_030 0.1325841862 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_001723_030 0.13428749 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
19 Hb_011053_030 0.1353236225 - - -
20 Hb_001628_120 0.1365695284 - - putative ascorbate peroxidase, partial [Taraxacum brevicorniculatum]

Gene co-expression network

sample Hb_000300_020 Hb_000300_020 Hb_009687_020 Hb_009687_020 Hb_000300_020--Hb_009687_020 Hb_000352_220 Hb_000352_220 Hb_000300_020--Hb_000352_220 Hb_126917_010 Hb_126917_010 Hb_000300_020--Hb_126917_010 Hb_000023_210 Hb_000023_210 Hb_000300_020--Hb_000023_210 Hb_003171_030 Hb_003171_030 Hb_000300_020--Hb_003171_030 Hb_000816_200 Hb_000816_200 Hb_000300_020--Hb_000816_200 Hb_009687_020--Hb_003171_030 Hb_006198_130 Hb_006198_130 Hb_009687_020--Hb_006198_130 Hb_158092_100 Hb_158092_100 Hb_009687_020--Hb_158092_100 Hb_004055_160 Hb_004055_160 Hb_009687_020--Hb_004055_160 Hb_001269_500 Hb_001269_500 Hb_009687_020--Hb_001269_500 Hb_000473_050 Hb_000473_050 Hb_009687_020--Hb_000473_050 Hb_000495_080 Hb_000495_080 Hb_000352_220--Hb_000495_080 Hb_007002_010 Hb_007002_010 Hb_000352_220--Hb_007002_010 Hb_003226_190 Hb_003226_190 Hb_000352_220--Hb_003226_190 Hb_002671_130 Hb_002671_130 Hb_000352_220--Hb_002671_130 Hb_000114_150 Hb_000114_150 Hb_000352_220--Hb_000114_150 Hb_000834_080 Hb_000834_080 Hb_126917_010--Hb_000834_080 Hb_126917_010--Hb_009687_020 Hb_126917_010--Hb_003171_030 Hb_011053_030 Hb_011053_030 Hb_126917_010--Hb_011053_030 Hb_126917_010--Hb_001269_500 Hb_000402_170 Hb_000402_170 Hb_000023_210--Hb_000402_170 Hb_002304_180 Hb_002304_180 Hb_000023_210--Hb_002304_180 Hb_000023_210--Hb_007002_010 Hb_011053_020 Hb_011053_020 Hb_000023_210--Hb_011053_020 Hb_000684_280 Hb_000684_280 Hb_000023_210--Hb_000684_280 Hb_003171_030--Hb_006198_130 Hb_000059_270 Hb_000059_270 Hb_003171_030--Hb_000059_270 Hb_003171_030--Hb_000816_200 Hb_001723_030 Hb_001723_030 Hb_003171_030--Hb_001723_030 Hb_003171_030--Hb_001269_500 Hb_016461_030 Hb_016461_030 Hb_000816_200--Hb_016461_030 Hb_001195_770 Hb_001195_770 Hb_000816_200--Hb_001195_770 Hb_003124_120 Hb_003124_120 Hb_000816_200--Hb_003124_120 Hb_029920_030 Hb_029920_030 Hb_000816_200--Hb_029920_030 Hb_000189_450 Hb_000189_450 Hb_000816_200--Hb_000189_450 Hb_007441_310 Hb_007441_310 Hb_000816_200--Hb_007441_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.31855 3.38226 17.4156 20.979 8.23324 5.54986
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.2333 8.96986 6.02808 8.0919 57.2928

CAGE analysis