Hb_003226_190

Information

Type -
Description -
Location Contig3226: 145861-148766
Sequence    

Annotation

kegg
ID rcu:RCOM_1178360
description DNA photolyase, putative (EC:4.1.99.3)
nr
ID XP_012082781.1
description PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]
swissprot
ID Q8LB72
description Blue-light photoreceptor PHR2 OS=Arabidopsis thaliana GN=PHR2 PE=2 SV=2
trembl
ID A0A067K8P2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13940 PE=4 SV=1
Gene Ontology
ID GO:0003904
description blue-light photoreceptor phr2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34177: 146036-146289 , PASA_asmbl_34178: 146355-148609
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003226_190 0.0 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]
2 Hb_000352_220 0.0876065087 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
3 Hb_000495_080 0.095457359 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
4 Hb_001405_080 0.1177295577 - - PREDICTED: acylamino-acid-releasing enzyme [Jatropha curcas]
5 Hb_003124_120 0.1199115457 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
6 Hb_000640_260 0.1239660173 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
7 Hb_001080_030 0.1244278233 - - AMP dependent ligase, putative [Ricinus communis]
8 Hb_001677_220 0.1245438298 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
9 Hb_002671_130 0.1252163257 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
10 Hb_003142_010 0.1259339866 transcription factor TF Family: SET PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase ATX5-like [Populus euphratica]
11 Hb_000739_210 0.1263487381 - - PREDICTED: pentatricopeptide repeat-containing protein At1g01970 [Jatropha curcas]
12 Hb_005305_020 0.1277638398 - - PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]
13 Hb_008511_140 0.1280976993 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632314 [Jatropha curcas]
14 Hb_002150_020 0.1294706009 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
15 Hb_052946_010 0.1313498721 - - PREDICTED: uncharacterized protein LOC105639103 [Jatropha curcas]
16 Hb_004041_030 0.1316830605 - - PREDICTED: mitochondrial substrate carrier family protein C-like isoform X1 [Populus euphratica]
17 Hb_000114_150 0.1350964736 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl-diphosphate synthase [Hevea brasiliensis]
18 Hb_002811_190 0.135317162 - - tRNA pseudouridine synthase d, putative [Ricinus communis]
19 Hb_000189_450 0.135540447 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
20 Hb_001009_260 0.1361729176 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003226_190 Hb_003226_190 Hb_000352_220 Hb_000352_220 Hb_003226_190--Hb_000352_220 Hb_000495_080 Hb_000495_080 Hb_003226_190--Hb_000495_080 Hb_001405_080 Hb_001405_080 Hb_003226_190--Hb_001405_080 Hb_003124_120 Hb_003124_120 Hb_003226_190--Hb_003124_120 Hb_000640_260 Hb_000640_260 Hb_003226_190--Hb_000640_260 Hb_001080_030 Hb_001080_030 Hb_003226_190--Hb_001080_030 Hb_000352_220--Hb_000495_080 Hb_007002_010 Hb_007002_010 Hb_000352_220--Hb_007002_010 Hb_000300_020 Hb_000300_020 Hb_000352_220--Hb_000300_020 Hb_002671_130 Hb_002671_130 Hb_000352_220--Hb_002671_130 Hb_000114_150 Hb_000114_150 Hb_000352_220--Hb_000114_150 Hb_008511_140 Hb_008511_140 Hb_000495_080--Hb_008511_140 Hb_000189_250 Hb_000189_250 Hb_000495_080--Hb_000189_250 Hb_000495_080--Hb_007002_010 Hb_000495_080--Hb_000640_260 Hb_003549_050 Hb_003549_050 Hb_001405_080--Hb_003549_050 Hb_004111_030 Hb_004111_030 Hb_001405_080--Hb_004111_030 Hb_004041_030 Hb_004041_030 Hb_001405_080--Hb_004041_030 Hb_002150_020 Hb_002150_020 Hb_001405_080--Hb_002150_020 Hb_052946_010 Hb_052946_010 Hb_001405_080--Hb_052946_010 Hb_002811_190 Hb_002811_190 Hb_001405_080--Hb_002811_190 Hb_000816_200 Hb_000816_200 Hb_003124_120--Hb_000816_200 Hb_010128_020 Hb_010128_020 Hb_003124_120--Hb_010128_020 Hb_016461_030 Hb_016461_030 Hb_003124_120--Hb_016461_030 Hb_001677_220 Hb_001677_220 Hb_003124_120--Hb_001677_220 Hb_000983_070 Hb_000983_070 Hb_003124_120--Hb_000983_070 Hb_002075_030 Hb_002075_030 Hb_003124_120--Hb_002075_030 Hb_001890_010 Hb_001890_010 Hb_000640_260--Hb_001890_010 Hb_021409_190 Hb_021409_190 Hb_000640_260--Hb_021409_190 Hb_166127_030 Hb_166127_030 Hb_000640_260--Hb_166127_030 Hb_000934_020 Hb_000934_020 Hb_000640_260--Hb_000934_020 Hb_000640_260--Hb_000189_250 Hb_003029_140 Hb_003029_140 Hb_000640_260--Hb_003029_140 Hb_001080_030--Hb_052946_010 Hb_000731_290 Hb_000731_290 Hb_001080_030--Hb_000731_290 Hb_005695_080 Hb_005695_080 Hb_001080_030--Hb_005695_080 Hb_159809_090 Hb_159809_090 Hb_001080_030--Hb_159809_090 Hb_001080_030--Hb_008511_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.17511 15.6481 21.8164 28.9099 3.83931 10.9359
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.9874 12.2169 10.4548 28.3707 103.047

CAGE analysis