Hb_005695_080

Information

Type -
Description -
Location Contig5695: 76644-89989
Sequence    

Annotation

kegg
ID rcu:RCOM_1033990
description Homomeric Acetyl-CoA Carboxylase (Hom-ACCase) (EC:6.4.1.2)
nr
ID XP_012078101.1
description PREDICTED: acetyl-CoA carboxylase 1-like [Jatropha curcas]
swissprot
ID Q38970
description Acetyl-CoA carboxylase 1 OS=Arabidopsis thaliana GN=ACC1 PE=1 SV=1
trembl
ID A0A067KCI5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11990 PE=4 SV=1
Gene Ontology
ID GO:0003989
description acetyl- carboxylase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005695_080 0.0 - - PREDICTED: acetyl-CoA carboxylase 1-like [Jatropha curcas]
2 Hb_001080_030 0.0964951383 - - AMP dependent ligase, putative [Ricinus communis]
3 Hb_001865_010 0.1039496324 transcription factor TF Family: B3 hypothetical protein RCOM_0465210 [Ricinus communis]
4 Hb_000406_190 0.1051354539 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
5 Hb_001425_010 0.1108388025 - - sugar transporter, putative [Ricinus communis]
6 Hb_001969_130 0.1120592256 - - PREDICTED: molybdate transporter 2 [Jatropha curcas]
7 Hb_052946_010 0.1136667663 - - PREDICTED: uncharacterized protein LOC105639103 [Jatropha curcas]
8 Hb_004041_030 0.1147814522 - - PREDICTED: mitochondrial substrate carrier family protein C-like isoform X1 [Populus euphratica]
9 Hb_001221_300 0.115168437 - - PREDICTED: acetolactate synthase 3, chloroplastic [Jatropha curcas]
10 Hb_000731_290 0.1163365745 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_003549_050 0.1185259969 - - PREDICTED: zinc phosphodiesterase ELAC protein 2-like [Jatropha curcas]
12 Hb_001405_080 0.119465179 - - PREDICTED: acylamino-acid-releasing enzyme [Jatropha curcas]
13 Hb_000977_150 0.1223364548 - - latex cyanogenic beta glucosidase [Hevea brasiliensis]
14 Hb_014006_010 0.1244636907 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
15 Hb_018043_020 0.1250234752 - - PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Jatropha curcas]
16 Hb_002811_190 0.1250578008 - - tRNA pseudouridine synthase d, putative [Ricinus communis]
17 Hb_000221_180 0.1265171341 - - VQ motif-containing family protein [Populus trichocarpa]
18 Hb_000167_120 0.1303770558 - - PREDICTED: U-box domain-containing protein 14 [Jatropha curcas]
19 Hb_000066_040 0.1324256087 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
20 Hb_159809_090 0.132868069 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis]

Gene co-expression network

sample Hb_005695_080 Hb_005695_080 Hb_001080_030 Hb_001080_030 Hb_005695_080--Hb_001080_030 Hb_001865_010 Hb_001865_010 Hb_005695_080--Hb_001865_010 Hb_000406_190 Hb_000406_190 Hb_005695_080--Hb_000406_190 Hb_001425_010 Hb_001425_010 Hb_005695_080--Hb_001425_010 Hb_001969_130 Hb_001969_130 Hb_005695_080--Hb_001969_130 Hb_052946_010 Hb_052946_010 Hb_005695_080--Hb_052946_010 Hb_001080_030--Hb_052946_010 Hb_000731_290 Hb_000731_290 Hb_001080_030--Hb_000731_290 Hb_159809_090 Hb_159809_090 Hb_001080_030--Hb_159809_090 Hb_008511_140 Hb_008511_140 Hb_001080_030--Hb_008511_140 Hb_003226_190 Hb_003226_190 Hb_001080_030--Hb_003226_190 Hb_022425_050 Hb_022425_050 Hb_001865_010--Hb_022425_050 Hb_001124_140 Hb_001124_140 Hb_001865_010--Hb_001124_140 Hb_013968_010 Hb_013968_010 Hb_001865_010--Hb_013968_010 Hb_001865_010--Hb_001969_130 Hb_001865_010--Hb_001425_010 Hb_000406_190--Hb_001080_030 Hb_014006_010 Hb_014006_010 Hb_000406_190--Hb_014006_010 Hb_000032_020 Hb_000032_020 Hb_000406_190--Hb_000032_020 Hb_000406_190--Hb_001865_010 Hb_000406_190--Hb_000731_290 Hb_018043_020 Hb_018043_020 Hb_001425_010--Hb_018043_020 Hb_008616_040 Hb_008616_040 Hb_001425_010--Hb_008616_040 Hb_001425_010--Hb_159809_090 Hb_000510_190 Hb_000510_190 Hb_001425_010--Hb_000510_190 Hb_003549_050 Hb_003549_050 Hb_001425_010--Hb_003549_050 Hb_003029_140 Hb_003029_140 Hb_001425_010--Hb_003029_140 Hb_000665_200 Hb_000665_200 Hb_001969_130--Hb_000665_200 Hb_001969_130--Hb_001124_140 Hb_002026_030 Hb_002026_030 Hb_001969_130--Hb_002026_030 Hb_001969_130--Hb_022425_050 Hb_000066_040 Hb_000066_040 Hb_001969_130--Hb_000066_040 Hb_001221_300 Hb_001221_300 Hb_001969_130--Hb_001221_300 Hb_052946_010--Hb_000731_290 Hb_000025_500 Hb_000025_500 Hb_052946_010--Hb_000025_500 Hb_004041_030 Hb_004041_030 Hb_052946_010--Hb_004041_030 Hb_052946_010--Hb_008511_140 Hb_052946_010--Hb_003029_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.943797 7.78732 6.39265 4.7656 0.798668 1.68543
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.34515 2.34963 1.50986 6.85307 15.8732

CAGE analysis