Hb_000406_190

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig406: 159266-167513
Sequence    

Annotation

kegg
ID rcu:RCOM_1429720
description phosphoprotein phosphatase, putative (EC:3.1.3.16)
nr
ID XP_002512305.1
description phosphoprotein phosphatase, putative [Ricinus communis]
swissprot
ID O81825
description Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1
trembl
ID B9REY6
description Phosphoprotein phosphatase, putative OS=Ricinus communis GN=RCOM_1429720 PE=4 SV=1
Gene Ontology
ID GO:0000166
description disease resistance gene nbs-lrr family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40272: 161946-162387 , PASA_asmbl_40273: 163190-163479 , PASA_asmbl_40274: 163558-164196 , PASA_asmbl_40275: 164299-164508 , PASA_asmbl_40276: 164799-165094
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000406_190 0.0 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
2 Hb_005695_080 0.1051354539 - - PREDICTED: acetyl-CoA carboxylase 1-like [Jatropha curcas]
3 Hb_001080_030 0.129719077 - - AMP dependent ligase, putative [Ricinus communis]
4 Hb_014006_010 0.1417530081 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
5 Hb_000032_020 0.144927515 - - Centromeric protein E, putative [Ricinus communis]
6 Hb_001865_010 0.1450595756 transcription factor TF Family: B3 hypothetical protein RCOM_0465210 [Ricinus communis]
7 Hb_000731_290 0.1460018395 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_005542_010 0.1499617058 - - Uncharacterized protein TCM_021447 [Theobroma cacao]
9 Hb_000879_030 0.1502916134 - - PREDICTED: uncharacterized protein LOC103707552 [Phoenix dactylifera]
10 Hb_000221_180 0.1516458959 - - VQ motif-containing family protein [Populus trichocarpa]
11 Hb_173808_010 0.1563108125 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
12 Hb_001425_010 0.1565192985 - - sugar transporter, putative [Ricinus communis]
13 Hb_000369_080 0.1590640116 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
14 Hb_118157_020 0.1596584815 - - hypothetical protein MTR_3g456110 [Medicago truncatula]
15 Hb_052946_010 0.1622666233 - - PREDICTED: uncharacterized protein LOC105639103 [Jatropha curcas]
16 Hb_002811_190 0.1629487938 - - tRNA pseudouridine synthase d, putative [Ricinus communis]
17 Hb_002078_270 0.1634439972 - - PREDICTED: F-box protein At1g67340 [Jatropha curcas]
18 Hb_000417_410 0.1645109053 - - PREDICTED: protein STICHEL-like 3 isoform X2 [Jatropha curcas]
19 Hb_000365_220 0.1648167626 - - protein phosphatase-1, putative [Ricinus communis]
20 Hb_159809_090 0.1672340307 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000406_190 Hb_000406_190 Hb_005695_080 Hb_005695_080 Hb_000406_190--Hb_005695_080 Hb_001080_030 Hb_001080_030 Hb_000406_190--Hb_001080_030 Hb_014006_010 Hb_014006_010 Hb_000406_190--Hb_014006_010 Hb_000032_020 Hb_000032_020 Hb_000406_190--Hb_000032_020 Hb_001865_010 Hb_001865_010 Hb_000406_190--Hb_001865_010 Hb_000731_290 Hb_000731_290 Hb_000406_190--Hb_000731_290 Hb_005695_080--Hb_001080_030 Hb_005695_080--Hb_001865_010 Hb_001425_010 Hb_001425_010 Hb_005695_080--Hb_001425_010 Hb_001969_130 Hb_001969_130 Hb_005695_080--Hb_001969_130 Hb_052946_010 Hb_052946_010 Hb_005695_080--Hb_052946_010 Hb_001080_030--Hb_052946_010 Hb_001080_030--Hb_000731_290 Hb_159809_090 Hb_159809_090 Hb_001080_030--Hb_159809_090 Hb_008511_140 Hb_008511_140 Hb_001080_030--Hb_008511_140 Hb_003226_190 Hb_003226_190 Hb_001080_030--Hb_003226_190 Hb_013399_090 Hb_013399_090 Hb_014006_010--Hb_013399_090 Hb_000340_360 Hb_000340_360 Hb_014006_010--Hb_000340_360 Hb_004586_090 Hb_004586_090 Hb_014006_010--Hb_004586_090 Hb_002078_470 Hb_002078_470 Hb_014006_010--Hb_002078_470 Hb_000221_180 Hb_000221_180 Hb_014006_010--Hb_000221_180 Hb_000154_130 Hb_000154_130 Hb_014006_010--Hb_000154_130 Hb_000879_030 Hb_000879_030 Hb_000032_020--Hb_000879_030 Hb_002110_110 Hb_002110_110 Hb_000032_020--Hb_002110_110 Hb_000032_020--Hb_000221_180 Hb_073973_020 Hb_073973_020 Hb_000032_020--Hb_073973_020 Hb_000175_270 Hb_000175_270 Hb_000032_020--Hb_000175_270 Hb_005542_010 Hb_005542_010 Hb_000032_020--Hb_005542_010 Hb_022425_050 Hb_022425_050 Hb_001865_010--Hb_022425_050 Hb_001124_140 Hb_001124_140 Hb_001865_010--Hb_001124_140 Hb_013968_010 Hb_013968_010 Hb_001865_010--Hb_013968_010 Hb_001865_010--Hb_001969_130 Hb_001865_010--Hb_001425_010 Hb_000731_290--Hb_052946_010 Hb_000025_500 Hb_000025_500 Hb_000731_290--Hb_000025_500 Hb_001341_010 Hb_001341_010 Hb_000731_290--Hb_001341_010 Hb_000167_120 Hb_000167_120 Hb_000731_290--Hb_000167_120 Hb_003549_050 Hb_003549_050 Hb_000731_290--Hb_003549_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.766982 3.7721 2.69613 1.21345 0.118405 0.838462
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.555327 0.568157 0.830014 3.4113 6.71296

CAGE analysis