Hb_001080_030

Information

Type -
Description -
Location Contig1080: 4359-7501
Sequence    

Annotation

kegg
ID rcu:RCOM_1600940
description AMP dependent ligase, putative (EC:6.2.1.26)
nr
ID XP_002510668.1
description AMP dependent ligase, putative [Ricinus communis]
swissprot
ID F4HUK6
description Probable acyl-activating enzyme 1, peroxisomal OS=Arabidopsis thaliana GN=AAE1 PE=2 SV=1
trembl
ID B9R8M5
description AMP dependent ligase, putative OS=Ricinus communis GN=RCOM_1600940 PE=4 SV=1
Gene Ontology
ID GO:0008756
description probable acyl-activating enzyme peroxisomal

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02400: 5651-7397 , PASA_asmbl_02401: 6547-6998
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001080_030 0.0 - - AMP dependent ligase, putative [Ricinus communis]
2 Hb_052946_010 0.0844650601 - - PREDICTED: uncharacterized protein LOC105639103 [Jatropha curcas]
3 Hb_000731_290 0.0872405392 - - ABC transporter family protein [Hevea brasiliensis]
4 Hb_005695_080 0.0964951383 - - PREDICTED: acetyl-CoA carboxylase 1-like [Jatropha curcas]
5 Hb_159809_090 0.1114789849 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis]
6 Hb_008511_140 0.1184454729 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632314 [Jatropha curcas]
7 Hb_003226_190 0.1244278233 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]
8 Hb_003029_140 0.1261239473 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
9 Hb_018043_020 0.1286487053 - - PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Jatropha curcas]
10 Hb_001405_080 0.1294349271 - - PREDICTED: acylamino-acid-releasing enzyme [Jatropha curcas]
11 Hb_000406_190 0.129719077 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
12 Hb_173808_010 0.1316736276 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
13 Hb_078477_060 0.1317774222 - - PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
14 Hb_004041_030 0.133581048 - - PREDICTED: mitochondrial substrate carrier family protein C-like isoform X1 [Populus euphratica]
15 Hb_003549_050 0.134136806 - - PREDICTED: zinc phosphodiesterase ELAC protein 2-like [Jatropha curcas]
16 Hb_000025_500 0.134156793 - - Ran GTPase binding protein, putative [Ricinus communis]
17 Hb_001425_010 0.1341836222 - - sugar transporter, putative [Ricinus communis]
18 Hb_002811_190 0.1375086809 - - tRNA pseudouridine synthase d, putative [Ricinus communis]
19 Hb_000167_120 0.1378517603 - - PREDICTED: U-box domain-containing protein 14 [Jatropha curcas]
20 Hb_012404_080 0.1395101567 - - PREDICTED: ABC transporter G family member 34-like [Jatropha curcas]

Gene co-expression network

sample Hb_001080_030 Hb_001080_030 Hb_052946_010 Hb_052946_010 Hb_001080_030--Hb_052946_010 Hb_000731_290 Hb_000731_290 Hb_001080_030--Hb_000731_290 Hb_005695_080 Hb_005695_080 Hb_001080_030--Hb_005695_080 Hb_159809_090 Hb_159809_090 Hb_001080_030--Hb_159809_090 Hb_008511_140 Hb_008511_140 Hb_001080_030--Hb_008511_140 Hb_003226_190 Hb_003226_190 Hb_001080_030--Hb_003226_190 Hb_052946_010--Hb_000731_290 Hb_000025_500 Hb_000025_500 Hb_052946_010--Hb_000025_500 Hb_004041_030 Hb_004041_030 Hb_052946_010--Hb_004041_030 Hb_052946_010--Hb_008511_140 Hb_003029_140 Hb_003029_140 Hb_052946_010--Hb_003029_140 Hb_000731_290--Hb_000025_500 Hb_001341_010 Hb_001341_010 Hb_000731_290--Hb_001341_010 Hb_000167_120 Hb_000167_120 Hb_000731_290--Hb_000167_120 Hb_003549_050 Hb_003549_050 Hb_000731_290--Hb_003549_050 Hb_001865_010 Hb_001865_010 Hb_005695_080--Hb_001865_010 Hb_000406_190 Hb_000406_190 Hb_005695_080--Hb_000406_190 Hb_001425_010 Hb_001425_010 Hb_005695_080--Hb_001425_010 Hb_001969_130 Hb_001969_130 Hb_005695_080--Hb_001969_130 Hb_005695_080--Hb_052946_010 Hb_018043_020 Hb_018043_020 Hb_159809_090--Hb_018043_020 Hb_159809_090--Hb_001425_010 Hb_159809_090--Hb_003029_140 Hb_008616_040 Hb_008616_040 Hb_159809_090--Hb_008616_040 Hb_159809_090--Hb_052946_010 Hb_007576_180 Hb_007576_180 Hb_159809_090--Hb_007576_180 Hb_000529_140 Hb_000529_140 Hb_008511_140--Hb_000529_140 Hb_000495_080 Hb_000495_080 Hb_008511_140--Hb_000495_080 Hb_030131_030 Hb_030131_030 Hb_008511_140--Hb_030131_030 Hb_000676_200 Hb_000676_200 Hb_008511_140--Hb_000676_200 Hb_000352_220 Hb_000352_220 Hb_003226_190--Hb_000352_220 Hb_003226_190--Hb_000495_080 Hb_001405_080 Hb_001405_080 Hb_003226_190--Hb_001405_080 Hb_003124_120 Hb_003124_120 Hb_003226_190--Hb_003124_120 Hb_000640_260 Hb_000640_260 Hb_003226_190--Hb_000640_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.523567 2.45783 1.50352 1.43572 0.434995 0.653373
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.800911 0.770224 0.630926 2.50684 6.84659

CAGE analysis