Hb_003549_050

Information

Type -
Description -
Location Contig3549: 44351-49457
Sequence    

Annotation

kegg
ID tcc:TCM_028839
description TRNAse Z4 isoform 1
nr
ID XP_012084887.1
description PREDICTED: zinc phosphodiesterase ELAC protein 2-like [Jatropha curcas]
swissprot
ID Q8HY87
description Zinc phosphodiesterase ELAC protein 2 OS=Macaca fascicularis GN=ELAC2 PE=2 SV=1
trembl
ID A0A067JSZ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20305 PE=3 SV=1
Gene Ontology
ID GO:0016891
description zinc phosphodiesterase elac protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36768: 44560-45828 , PASA_asmbl_36770: 46373-46962 , PASA_asmbl_36771: 47182-47374 , PASA_asmbl_36772: 47861-48499
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003549_050 0.0 - - PREDICTED: zinc phosphodiesterase ELAC protein 2-like [Jatropha curcas]
2 Hb_001405_080 0.0858215161 - - PREDICTED: acylamino-acid-releasing enzyme [Jatropha curcas]
3 Hb_001425_010 0.0971312351 - - sugar transporter, putative [Ricinus communis]
4 Hb_000922_260 0.1002413964 - - PREDICTED: pantothenate kinase 2 [Jatropha curcas]
5 Hb_052946_010 0.1038627222 - - PREDICTED: uncharacterized protein LOC105639103 [Jatropha curcas]
6 Hb_004111_030 0.1048604505 - - PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Jatropha curcas]
7 Hb_006816_010 0.1100997992 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000731_290 0.1102501797 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_003490_050 0.1119821761 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic [Jatropha curcas]
10 Hb_005571_010 0.1139497599 - - PREDICTED: 15-cis-phytoene desaturase, chloroplastic/chromoplastic [Jatropha curcas]
11 Hb_001564_070 0.1177862086 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
12 Hb_005695_080 0.1185259969 - - PREDICTED: acetyl-CoA carboxylase 1-like [Jatropha curcas]
13 Hb_004041_030 0.1227959064 - - PREDICTED: mitochondrial substrate carrier family protein C-like isoform X1 [Populus euphratica]
14 Hb_000510_190 0.1229950652 - - glutathione reductase [Hevea brasiliensis]
15 Hb_002150_020 0.1237302618 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
16 Hb_000496_130 0.1249770071 - - PREDICTED: fructokinase-1 [Jatropha curcas]
17 Hb_001579_200 0.1253461928 - - nucleoredoxin, putative [Ricinus communis]
18 Hb_000256_160 0.1263256293 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 3-like isoform X1 [Glycine max]
19 Hb_000668_110 0.1268862294 - - PREDICTED: acetyl-CoA carboxylase 1-like [Jatropha curcas]
20 Hb_011174_080 0.1284228503 - - PREDICTED: sulfite oxidase [Jatropha curcas]

Gene co-expression network

sample Hb_003549_050 Hb_003549_050 Hb_001405_080 Hb_001405_080 Hb_003549_050--Hb_001405_080 Hb_001425_010 Hb_001425_010 Hb_003549_050--Hb_001425_010 Hb_000922_260 Hb_000922_260 Hb_003549_050--Hb_000922_260 Hb_052946_010 Hb_052946_010 Hb_003549_050--Hb_052946_010 Hb_004111_030 Hb_004111_030 Hb_003549_050--Hb_004111_030 Hb_006816_010 Hb_006816_010 Hb_003549_050--Hb_006816_010 Hb_001405_080--Hb_004111_030 Hb_004041_030 Hb_004041_030 Hb_001405_080--Hb_004041_030 Hb_002150_020 Hb_002150_020 Hb_001405_080--Hb_002150_020 Hb_001405_080--Hb_052946_010 Hb_002811_190 Hb_002811_190 Hb_001405_080--Hb_002811_190 Hb_018043_020 Hb_018043_020 Hb_001425_010--Hb_018043_020 Hb_008616_040 Hb_008616_040 Hb_001425_010--Hb_008616_040 Hb_159809_090 Hb_159809_090 Hb_001425_010--Hb_159809_090 Hb_000510_190 Hb_000510_190 Hb_001425_010--Hb_000510_190 Hb_003029_140 Hb_003029_140 Hb_001425_010--Hb_003029_140 Hb_003490_050 Hb_003490_050 Hb_000922_260--Hb_003490_050 Hb_000668_110 Hb_000668_110 Hb_000922_260--Hb_000668_110 Hb_000256_110 Hb_000256_110 Hb_000922_260--Hb_000256_110 Hb_002232_490 Hb_002232_490 Hb_000922_260--Hb_002232_490 Hb_000922_260--Hb_001405_080 Hb_000731_290 Hb_000731_290 Hb_052946_010--Hb_000731_290 Hb_001080_030 Hb_001080_030 Hb_052946_010--Hb_001080_030 Hb_000025_500 Hb_000025_500 Hb_052946_010--Hb_000025_500 Hb_052946_010--Hb_004041_030 Hb_008511_140 Hb_008511_140 Hb_052946_010--Hb_008511_140 Hb_052946_010--Hb_003029_140 Hb_013749_050 Hb_013749_050 Hb_004111_030--Hb_013749_050 Hb_005571_010 Hb_005571_010 Hb_004111_030--Hb_005571_010 Hb_001890_010 Hb_001890_010 Hb_004111_030--Hb_001890_010 Hb_001105_100 Hb_001105_100 Hb_004111_030--Hb_001105_100 Hb_004111_030--Hb_002150_020 Hb_003355_010 Hb_003355_010 Hb_004111_030--Hb_003355_010 Hb_002010_090 Hb_002010_090 Hb_006816_010--Hb_002010_090 Hb_006816_010--Hb_000510_190 Hb_004162_220 Hb_004162_220 Hb_006816_010--Hb_004162_220 Hb_000487_370 Hb_000487_370 Hb_006816_010--Hb_000487_370 Hb_007576_180 Hb_007576_180 Hb_006816_010--Hb_007576_180 Hb_003490_060 Hb_003490_060 Hb_006816_010--Hb_003490_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.34834 1.03351 1.26547 1.25694 0.390986 0.502111
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.249346 0.600904 0.257745 1.95612 3.16192

CAGE analysis