Hb_006816_010

Information

Type -
Description -
Location Contig6816: 19845-23932
Sequence    

Annotation

kegg
ID rcu:RCOM_1435350
description hypothetical protein
nr
ID XP_002512519.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8W4E7
description Solute carrier family 40 member 3, chloroplastic OS=Arabidopsis thaliana GN=IREG3 PE=1 SV=1
trembl
ID B9RFK0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1435350 PE=4 SV=1
Gene Ontology
ID GO:0016021
description solute carrier family 40 member chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53783: 20374-20583
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002010_090 0.0834041945 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
3 Hb_000510_190 0.0976149565 - - glutathione reductase [Hevea brasiliensis]
4 Hb_004162_220 0.0981728807 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
5 Hb_000487_370 0.0992723883 - - -
6 Hb_007576_180 0.1043905376 - - PREDICTED: probable protein phosphatase 2C 62 isoform X5 [Jatropha curcas]
7 Hb_003490_060 0.1055955994 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X2 [Sesamum indicum]
8 Hb_011188_010 0.1068734287 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
9 Hb_000594_060 0.1069513859 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
10 Hb_001425_010 0.1076756401 - - sugar transporter, putative [Ricinus communis]
11 Hb_000496_130 0.1085177333 - - PREDICTED: fructokinase-1 [Jatropha curcas]
12 Hb_003549_050 0.1100997992 - - PREDICTED: zinc phosphodiesterase ELAC protein 2-like [Jatropha curcas]
13 Hb_002828_060 0.1103047821 - - PREDICTED: probable phytol kinase 3, chloroplastic [Jatropha curcas]
14 Hb_000230_530 0.1136247175 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001484_090 0.114493468 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
16 Hb_000109_260 0.1145369323 - - PREDICTED: WAT1-related protein At3g28050-like isoform X1 [Jatropha curcas]
17 Hb_000300_560 0.116936998 - - PREDICTED: probable glycosyltransferase At5g03795 isoform X1 [Jatropha curcas]
18 Hb_000665_070 0.1176220399 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 3 isoform X1 [Jatropha curcas]
19 Hb_001821_060 0.120423053 - - PREDICTED: C-type lectin receptor-like tyrosine-protein kinase At1g52310 [Jatropha curcas]
20 Hb_000976_110 0.1205474035 - - PREDICTED: KRR1 small subunit processome component homolog [Jatropha curcas]

Gene co-expression network

sample Hb_006816_010 Hb_006816_010 Hb_002010_090 Hb_002010_090 Hb_006816_010--Hb_002010_090 Hb_000510_190 Hb_000510_190 Hb_006816_010--Hb_000510_190 Hb_004162_220 Hb_004162_220 Hb_006816_010--Hb_004162_220 Hb_000487_370 Hb_000487_370 Hb_006816_010--Hb_000487_370 Hb_007576_180 Hb_007576_180 Hb_006816_010--Hb_007576_180 Hb_003490_060 Hb_003490_060 Hb_006816_010--Hb_003490_060 Hb_000230_530 Hb_000230_530 Hb_002010_090--Hb_000230_530 Hb_000094_150 Hb_000094_150 Hb_002010_090--Hb_000094_150 Hb_000256_160 Hb_000256_160 Hb_002010_090--Hb_000256_160 Hb_002010_090--Hb_000510_190 Hb_011188_010 Hb_011188_010 Hb_002010_090--Hb_011188_010 Hb_000510_190--Hb_000487_370 Hb_000414_080 Hb_000414_080 Hb_000510_190--Hb_000414_080 Hb_002828_060 Hb_002828_060 Hb_000510_190--Hb_002828_060 Hb_002249_080 Hb_002249_080 Hb_000510_190--Hb_002249_080 Hb_009296_020 Hb_009296_020 Hb_000510_190--Hb_009296_020 Hb_000510_190--Hb_003490_060 Hb_003058_140 Hb_003058_140 Hb_004162_220--Hb_003058_140 Hb_004577_010 Hb_004577_010 Hb_004162_220--Hb_004577_010 Hb_000172_360 Hb_000172_360 Hb_004162_220--Hb_000172_360 Hb_000976_110 Hb_000976_110 Hb_004162_220--Hb_000976_110 Hb_000109_260 Hb_000109_260 Hb_004162_220--Hb_000109_260 Hb_000487_370--Hb_000414_080 Hb_000594_060 Hb_000594_060 Hb_000487_370--Hb_000594_060 Hb_004052_110 Hb_004052_110 Hb_000487_370--Hb_004052_110 Hb_001059_060 Hb_001059_060 Hb_000487_370--Hb_001059_060 Hb_000487_370--Hb_002249_080 Hb_000803_220 Hb_000803_220 Hb_007576_180--Hb_000803_220 Hb_010984_010 Hb_010984_010 Hb_007576_180--Hb_010984_010 Hb_004629_030 Hb_004629_030 Hb_007576_180--Hb_004629_030 Hb_004837_020 Hb_004837_020 Hb_007576_180--Hb_004837_020 Hb_001425_010 Hb_001425_010 Hb_007576_180--Hb_001425_010 Hb_018043_020 Hb_018043_020 Hb_007576_180--Hb_018043_020 Hb_003490_060--Hb_002828_060 Hb_106890_010 Hb_106890_010 Hb_003490_060--Hb_106890_010 Hb_003490_060--Hb_000976_110 Hb_002392_020 Hb_002392_020 Hb_003490_060--Hb_002392_020 Hb_003490_060--Hb_000109_260 Hb_003355_010 Hb_003355_010 Hb_003490_060--Hb_003355_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.859674 2.55096 4.59048 2.98473 1.19674 1.35875
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.728849 1.06506 0.249045 3.73937 5.96837

CAGE analysis