Hb_000256_160

Information

Type transcription factor
Description TF Family: HB
Location Contig256: 252282-257933
Sequence    

Annotation

kegg
ID gmx:100784317
description homeobox protein knotted-1-like 3-like
nr
ID XP_003550200.1
description PREDICTED: homeobox protein knotted-1-like 3-like isoform X1 [Glycine max]
swissprot
ID P48000
description Homeobox protein knotted-1-like 3 OS=Arabidopsis thaliana GN=KNAT3 PE=1 SV=1
trembl
ID A0A0B0MQP6
description Homeobox protein knotted-1-like 3 OS=Gossypium arboreum GN=F383_29909 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox protein knotted-1-like 3 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26694: 252330-252558 , PASA_asmbl_26695: 252939-257830 , PASA_asmbl_26696: 253400-253750
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000256_160 0.0 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 3-like isoform X1 [Glycine max]
2 Hb_001235_130 0.0829717197 - - -
3 Hb_003226_090 0.083414535 - - PREDICTED: bifunctional epoxide hydrolase 2 [Jatropha curcas]
4 Hb_000094_150 0.0868624422 - - -
5 Hb_004129_010 0.0881178143 - - aspartate aminotransferase, putative [Ricinus communis]
6 Hb_005588_120 0.0884051492 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002010_090 0.0919322094 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
8 Hb_007229_050 0.0920205024 - - PREDICTED: palmitoyl-protein thioesterase 1 isoform X1 [Jatropha curcas]
9 Hb_000261_310 0.0935358585 - - PREDICTED: UV radiation resistance-associated gene protein isoform X3 [Jatropha curcas]
10 Hb_009193_010 0.0958640705 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
11 Hb_011174_080 0.0973053088 - - PREDICTED: sulfite oxidase [Jatropha curcas]
12 Hb_001821_060 0.0981888276 - - PREDICTED: C-type lectin receptor-like tyrosine-protein kinase At1g52310 [Jatropha curcas]
13 Hb_005854_040 0.1058116005 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000007_410 0.110133341 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 isoform X2 [Populus euphratica]
15 Hb_000510_190 0.1112647578 - - glutathione reductase [Hevea brasiliensis]
16 Hb_013968_010 0.1142226108 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
17 Hb_000066_040 0.1143527369 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
18 Hb_001307_200 0.1146975884 - - PREDICTED: uncharacterized protein LOC105644489 [Jatropha curcas]
19 Hb_001564_070 0.1190833072 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
20 Hb_000157_140 0.1196929739 - - cinnamoyl-CoA reductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000256_160 Hb_000256_160 Hb_001235_130 Hb_001235_130 Hb_000256_160--Hb_001235_130 Hb_003226_090 Hb_003226_090 Hb_000256_160--Hb_003226_090 Hb_000094_150 Hb_000094_150 Hb_000256_160--Hb_000094_150 Hb_004129_010 Hb_004129_010 Hb_000256_160--Hb_004129_010 Hb_005588_120 Hb_005588_120 Hb_000256_160--Hb_005588_120 Hb_002010_090 Hb_002010_090 Hb_000256_160--Hb_002010_090 Hb_011174_080 Hb_011174_080 Hb_001235_130--Hb_011174_080 Hb_007229_050 Hb_007229_050 Hb_001235_130--Hb_007229_050 Hb_005854_040 Hb_005854_040 Hb_001235_130--Hb_005854_040 Hb_001235_130--Hb_005588_120 Hb_009535_030 Hb_009535_030 Hb_001235_130--Hb_009535_030 Hb_013968_010 Hb_013968_010 Hb_003226_090--Hb_013968_010 Hb_000007_410 Hb_000007_410 Hb_003226_090--Hb_000007_410 Hb_004883_020 Hb_004883_020 Hb_003226_090--Hb_004883_020 Hb_003226_090--Hb_002010_090 Hb_000230_530 Hb_000230_530 Hb_003226_090--Hb_000230_530 Hb_000094_150--Hb_002010_090 Hb_001059_060 Hb_001059_060 Hb_000094_150--Hb_001059_060 Hb_000261_310 Hb_000261_310 Hb_000094_150--Hb_000261_310 Hb_001404_090 Hb_001404_090 Hb_000094_150--Hb_001404_090 Hb_000248_100 Hb_000248_100 Hb_000094_150--Hb_000248_100 Hb_004129_010--Hb_005588_120 Hb_001754_050 Hb_001754_050 Hb_004129_010--Hb_001754_050 Hb_004129_010--Hb_007229_050 Hb_000157_140 Hb_000157_140 Hb_004129_010--Hb_000157_140 Hb_003030_010 Hb_003030_010 Hb_004129_010--Hb_003030_010 Hb_000416_060 Hb_000416_060 Hb_005588_120--Hb_000416_060 Hb_132840_030 Hb_132840_030 Hb_005588_120--Hb_132840_030 Hb_000340_220 Hb_000340_220 Hb_005588_120--Hb_000340_220 Hb_002010_090--Hb_000230_530 Hb_006816_010 Hb_006816_010 Hb_002010_090--Hb_006816_010 Hb_000510_190 Hb_000510_190 Hb_002010_090--Hb_000510_190 Hb_011188_010 Hb_011188_010 Hb_002010_090--Hb_011188_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.72726 18.0315 21.4583 20.6165 2.9539 3.82963
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.13263 5.09 3.22858 24.5498 28.5744

CAGE analysis