Hb_000094_150

Information

Type -
Description -
Location Contig94: 104518-119792
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63093: 104621-113967 , PASA_asmbl_63094: 104621-113967 , PASA_asmbl_63095: 111732-113164
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000094_150 0.0 - - -
2 Hb_002010_090 0.0863074703 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
3 Hb_000256_160 0.0868624422 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 3-like isoform X1 [Glycine max]
4 Hb_001059_060 0.0965353683 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]
5 Hb_000261_310 0.097339856 - - PREDICTED: UV radiation resistance-associated gene protein isoform X3 [Jatropha curcas]
6 Hb_001404_090 0.1087956253 - - PREDICTED: kinesin-like protein NACK2 [Camelina sativa]
7 Hb_000248_100 0.1106682524 - - PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]
8 Hb_004129_010 0.1113175728 - - aspartate aminotransferase, putative [Ricinus communis]
9 Hb_024714_070 0.1122740399 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
10 Hb_002383_050 0.1123108298 - - PREDICTED: uncharacterized protein LOC105628744 [Jatropha curcas]
11 Hb_011188_010 0.1125151892 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
12 Hb_009078_020 0.1142375484 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
13 Hb_005588_120 0.1142526166 - - conserved hypothetical protein [Ricinus communis]
14 Hb_083078_010 0.1151867891 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
15 Hb_003226_090 0.1163592795 - - PREDICTED: bifunctional epoxide hydrolase 2 [Jatropha curcas]
16 Hb_000098_180 0.116470732 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
17 Hb_000227_320 0.1172127937 - - unnamed protein product [Vitis vinifera]
18 Hb_001103_060 0.1181874388 - - proton-dependent oligopeptide transport family protein [Populus trichocarpa]
19 Hb_000853_330 0.1219206892 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
20 Hb_013968_010 0.1221690972 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]

Gene co-expression network

sample Hb_000094_150 Hb_000094_150 Hb_002010_090 Hb_002010_090 Hb_000094_150--Hb_002010_090 Hb_000256_160 Hb_000256_160 Hb_000094_150--Hb_000256_160 Hb_001059_060 Hb_001059_060 Hb_000094_150--Hb_001059_060 Hb_000261_310 Hb_000261_310 Hb_000094_150--Hb_000261_310 Hb_001404_090 Hb_001404_090 Hb_000094_150--Hb_001404_090 Hb_000248_100 Hb_000248_100 Hb_000094_150--Hb_000248_100 Hb_000230_530 Hb_000230_530 Hb_002010_090--Hb_000230_530 Hb_006816_010 Hb_006816_010 Hb_002010_090--Hb_006816_010 Hb_002010_090--Hb_000256_160 Hb_000510_190 Hb_000510_190 Hb_002010_090--Hb_000510_190 Hb_011188_010 Hb_011188_010 Hb_002010_090--Hb_011188_010 Hb_001235_130 Hb_001235_130 Hb_000256_160--Hb_001235_130 Hb_003226_090 Hb_003226_090 Hb_000256_160--Hb_003226_090 Hb_004129_010 Hb_004129_010 Hb_000256_160--Hb_004129_010 Hb_005588_120 Hb_005588_120 Hb_000256_160--Hb_005588_120 Hb_009078_020 Hb_009078_020 Hb_001059_060--Hb_009078_020 Hb_000853_330 Hb_000853_330 Hb_001059_060--Hb_000853_330 Hb_004052_110 Hb_004052_110 Hb_001059_060--Hb_004052_110 Hb_001059_060--Hb_011188_010 Hb_001998_210 Hb_001998_210 Hb_001059_060--Hb_001998_210 Hb_001439_070 Hb_001439_070 Hb_001059_060--Hb_001439_070 Hb_000261_310--Hb_000256_160 Hb_000309_030 Hb_000309_030 Hb_000261_310--Hb_000309_030 Hb_000116_240 Hb_000116_240 Hb_000261_310--Hb_000116_240 Hb_007575_030 Hb_007575_030 Hb_000261_310--Hb_007575_030 Hb_004096_220 Hb_004096_220 Hb_000261_310--Hb_004096_220 Hb_000416_060 Hb_000416_060 Hb_001404_090--Hb_000416_060 Hb_132840_030 Hb_132840_030 Hb_001404_090--Hb_132840_030 Hb_001404_090--Hb_005588_120 Hb_001307_200 Hb_001307_200 Hb_001404_090--Hb_001307_200 Hb_073973_020 Hb_073973_020 Hb_001404_090--Hb_073973_020 Hb_158845_060 Hb_158845_060 Hb_000248_100--Hb_158845_060 Hb_024758_020 Hb_024758_020 Hb_000248_100--Hb_024758_020 Hb_003964_110 Hb_003964_110 Hb_000248_100--Hb_003964_110 Hb_003050_150 Hb_003050_150 Hb_000248_100--Hb_003050_150 Hb_000248_100--Hb_000261_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.54615 13.3003 15.5001 13.6504 2.78511 1.79836
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.42436 3.77208 1.33749 13.2898 14.2766

CAGE analysis