Hb_000309_030

Information

Type -
Description -
Location Contig309: 26820-31105
Sequence    

Annotation

kegg
ID tcc:TCM_016872
description Formate dehydrogenase
nr
ID XP_012081743.1
description PREDICTED: formate dehydrogenase, mitochondrial [Jatropha curcas]
swissprot
ID Q07511
description Formate dehydrogenase, mitochondrial OS=Solanum tuberosum GN=FDH1 PE=1 SV=2
trembl
ID A0A067LAE1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09611 PE=3 SV=1
Gene Ontology
ID GO:0009507
description formate mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32612: 26879-31021
cDNA
(Sanger)
(ID:Location)		 015_J21.ab1: 28603-31015 , 020_B19.ab1: 28502-31021 , 034_J08.ab1: 28456-31021 , 037_H09.ab1: 28458-31021 , 051_C24.ab1: 28508-31021

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000309_030 0.0 - - PREDICTED: formate dehydrogenase, mitochondrial [Jatropha curcas]
2 Hb_000116_240 0.091494582 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]
3 Hb_000261_310 0.0948939203 - - PREDICTED: UV radiation resistance-associated gene protein isoform X3 [Jatropha curcas]
4 Hb_004883_020 0.0980974982 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
5 Hb_000318_170 0.1005803153 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
6 Hb_010050_020 0.1020409897 - - PREDICTED: uncharacterized protein LOC102601222 [Solanum tuberosum]
7 Hb_000590_070 0.1046582771 - - PREDICTED: beta-hexosaminidase 1 [Jatropha curcas]
8 Hb_003430_080 0.1066309469 - - zinc finger protein, putative [Ricinus communis]
9 Hb_010407_030 0.1093939001 - - PREDICTED: casein kinase I-like [Jatropha curcas]
10 Hb_012760_090 0.1102602159 - - Aspartic proteinase-like protein 1 [Morus notabilis]
11 Hb_004218_130 0.1103406362 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
12 Hb_002641_160 0.1118006209 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001221_390 0.1124162065 - - Phospholipase C 4 precursor, putative [Ricinus communis]
14 Hb_000803_120 0.1131004103 - - PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X1 [Jatropha curcas]
15 Hb_172706_020 0.1137207539 - - PREDICTED: protein ABIL2 [Jatropha curcas]
16 Hb_000220_110 0.1142887172 - - fructose-bisphosphate aldolase, putative [Ricinus communis]
17 Hb_034507_060 0.1148579409 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic-like [Citrus sinensis]
18 Hb_007575_030 0.116231266 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
19 Hb_005694_180 0.1175538321 - - PREDICTED: cytochrome b5 [Jatropha curcas]
20 Hb_023226_030 0.1220821189 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-14-like [Jatropha curcas]

Gene co-expression network

sample Hb_000309_030 Hb_000309_030 Hb_000116_240 Hb_000116_240 Hb_000309_030--Hb_000116_240 Hb_000261_310 Hb_000261_310 Hb_000309_030--Hb_000261_310 Hb_004883_020 Hb_004883_020 Hb_000309_030--Hb_004883_020 Hb_000318_170 Hb_000318_170 Hb_000309_030--Hb_000318_170 Hb_010050_020 Hb_010050_020 Hb_000309_030--Hb_010050_020 Hb_000590_070 Hb_000590_070 Hb_000309_030--Hb_000590_070 Hb_005485_070 Hb_005485_070 Hb_000116_240--Hb_005485_070 Hb_000116_240--Hb_000590_070 Hb_001277_400 Hb_001277_400 Hb_000116_240--Hb_001277_400 Hb_000116_240--Hb_000261_310 Hb_000116_240--Hb_000318_170 Hb_000256_160 Hb_000256_160 Hb_000261_310--Hb_000256_160 Hb_000094_150 Hb_000094_150 Hb_000261_310--Hb_000094_150 Hb_007575_030 Hb_007575_030 Hb_000261_310--Hb_007575_030 Hb_004096_220 Hb_004096_220 Hb_000261_310--Hb_004096_220 Hb_004883_020--Hb_007575_030 Hb_001754_050 Hb_001754_050 Hb_004883_020--Hb_001754_050 Hb_003226_090 Hb_003226_090 Hb_004883_020--Hb_003226_090 Hb_004297_090 Hb_004297_090 Hb_004883_020--Hb_004297_090 Hb_000098_180 Hb_000098_180 Hb_004883_020--Hb_000098_180 Hb_000318_170--Hb_005485_070 Hb_000791_050 Hb_000791_050 Hb_000318_170--Hb_000791_050 Hb_000731_210 Hb_000731_210 Hb_000318_170--Hb_000731_210 Hb_000318_170--Hb_007575_030 Hb_012760_090 Hb_012760_090 Hb_010050_020--Hb_012760_090 Hb_001221_390 Hb_001221_390 Hb_010050_020--Hb_001221_390 Hb_000622_330 Hb_000622_330 Hb_010050_020--Hb_000622_330 Hb_002641_160 Hb_002641_160 Hb_010050_020--Hb_002641_160 Hb_004522_030 Hb_004522_030 Hb_010050_020--Hb_004522_030 Hb_000012_400 Hb_000012_400 Hb_010050_020--Hb_000012_400 Hb_005181_060 Hb_005181_060 Hb_000590_070--Hb_005181_060 Hb_007317_020 Hb_007317_020 Hb_000590_070--Hb_007317_020 Hb_000590_070--Hb_005485_070 Hb_000120_740 Hb_000120_740 Hb_000590_070--Hb_000120_740
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.80974 29.5271 53.3089 71.6487 8.6995 8.36415
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.1728 5.72001 3.59394 56.3948 35.7018

CAGE analysis