Hb_005181_060

Information

Type -
Description -
Location Contig5181: 30224-35830
Sequence    

Annotation

kegg
ID rcu:RCOM_1000580
description ATP-citrate synthase, putative (EC:2.3.3.8)
nr
ID XP_002519229.1
description ATP-citrate synthase, putative [Ricinus communis]
swissprot
ID Q93VT8
description ATP-citrate synthase beta chain protein 1 OS=Oryza sativa subsp. japonica GN=ACLB-1 PE=2 SV=1
trembl
ID B9RZR0
description ATP-citrate synthase, putative OS=Ricinus communis GN=RCOM_1000580 PE=4 SV=1
Gene Ontology
ID GO:0003878
description atp-citrate synthase beta chain protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46564: 33846-35578 , PASA_asmbl_46565: 30089-35894 , PASA_asmbl_46566: 35664-35802
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005181_060 0.0 - - ATP-citrate synthase, putative [Ricinus communis]
2 Hb_000590_070 0.0794556914 - - PREDICTED: beta-hexosaminidase 1 [Jatropha curcas]
3 Hb_002527_060 0.1249401734 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
4 Hb_002026_070 0.1280977012 - - hypothetical protein PHAVU_002G2910001g, partial [Phaseolus vulgaris]
5 Hb_001894_010 0.1306127506 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
6 Hb_005485_070 0.1328725151 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
7 Hb_000473_030 0.1358957607 - - hypothetical protein JCGZ_19297 [Jatropha curcas]
8 Hb_003092_050 0.1381378841 - - PREDICTED: putative chloride channel-like protein CLC-g [Jatropha curcas]
9 Hb_003371_190 0.1391419227 - - PREDICTED: beta-glucosidase 13-like [Jatropha curcas]
10 Hb_000337_010 0.142410804 - - PREDICTED: proteasome activator subunit 4 isoform X2 [Jatropha curcas]
11 Hb_000116_240 0.1433600989 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]
12 Hb_007317_020 0.1433646118 - - PREDICTED: transmembrane 9 superfamily member 5 isoform X1 [Jatropha curcas]
13 Hb_098533_010 0.1458751543 - - hypothetical protein L484_003492 [Morus notabilis]
14 Hb_153257_010 0.1492903137 - - PREDICTED: hippocampus abundant transcript-like protein 1 [Jatropha curcas]
15 Hb_000019_170 0.1509961718 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
16 Hb_009535_030 0.151129196 - - CP2 [Hevea brasiliensis]
17 Hb_000330_150 0.1513392629 - - PREDICTED: dihydroflavonol-4-reductase-like [Jatropha curcas]
18 Hb_000244_260 0.1518047287 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 isoform X2 [Jatropha curcas]
19 Hb_000309_030 0.1525922883 - - PREDICTED: formate dehydrogenase, mitochondrial [Jatropha curcas]
20 Hb_001619_030 0.1558901066 - - annexin, putative [Ricinus communis]

Gene co-expression network

sample Hb_005181_060 Hb_005181_060 Hb_000590_070 Hb_000590_070 Hb_005181_060--Hb_000590_070 Hb_002527_060 Hb_002527_060 Hb_005181_060--Hb_002527_060 Hb_002026_070 Hb_002026_070 Hb_005181_060--Hb_002026_070 Hb_001894_010 Hb_001894_010 Hb_005181_060--Hb_001894_010 Hb_005485_070 Hb_005485_070 Hb_005181_060--Hb_005485_070 Hb_000473_030 Hb_000473_030 Hb_005181_060--Hb_000473_030 Hb_000116_240 Hb_000116_240 Hb_000590_070--Hb_000116_240 Hb_007317_020 Hb_007317_020 Hb_000590_070--Hb_007317_020 Hb_000309_030 Hb_000309_030 Hb_000590_070--Hb_000309_030 Hb_000590_070--Hb_005485_070 Hb_000120_740 Hb_000120_740 Hb_000590_070--Hb_000120_740 Hb_002527_060--Hb_001894_010 Hb_002527_060--Hb_000590_070 Hb_001619_030 Hb_001619_030 Hb_002527_060--Hb_001619_030 Hb_002527_060--Hb_005485_070 Hb_002739_040 Hb_002739_040 Hb_002527_060--Hb_002739_040 Hb_014497_060 Hb_014497_060 Hb_002026_070--Hb_014497_060 Hb_169586_010 Hb_169586_010 Hb_002026_070--Hb_169586_010 Hb_000019_170 Hb_000019_170 Hb_002026_070--Hb_000019_170 Hb_000922_260 Hb_000922_260 Hb_002026_070--Hb_000922_260 Hb_000244_260 Hb_000244_260 Hb_002026_070--Hb_000244_260 Hb_002232_490 Hb_002232_490 Hb_002026_070--Hb_002232_490 Hb_003092_050 Hb_003092_050 Hb_001894_010--Hb_003092_050 Hb_001894_010--Hb_005485_070 Hb_001894_010--Hb_000590_070 Hb_001894_010--Hb_000120_740 Hb_036388_010 Hb_036388_010 Hb_001894_010--Hb_036388_010 Hb_005485_070--Hb_000116_240 Hb_000318_170 Hb_000318_170 Hb_005485_070--Hb_000318_170 Hb_008695_150 Hb_008695_150 Hb_005485_070--Hb_008695_150 Hb_001277_400 Hb_001277_400 Hb_005485_070--Hb_001277_400 Hb_003106_110 Hb_003106_110 Hb_005485_070--Hb_003106_110 Hb_000473_030--Hb_000019_170 Hb_000473_030--Hb_000590_070 Hb_000473_030--Hb_007317_020 Hb_000365_200 Hb_000365_200 Hb_000473_030--Hb_000365_200 Hb_009535_030 Hb_009535_030 Hb_000473_030--Hb_009535_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.68049 11.0415 22.7903 48.5611 6.06789 5.99315
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.4525 1.8193 4.19528 55.3933 31.1749

CAGE analysis