Hb_001619_030

Information

Type -
Description -
Location Contig1619: 46766-49242
Sequence    

Annotation

kegg
ID rcu:RCOM_1034990
description annexin, putative
nr
ID XP_002513910.1
description annexin, putative [Ricinus communis]
swissprot
ID Q9SYT0
description Annexin D1 OS=Arabidopsis thaliana GN=ANN1 PE=1 SV=1
trembl
ID B9RJJ1
description Annexin OS=Ricinus communis GN=RCOM_1034990 PE=3 SV=1
Gene Ontology
ID GO:0005618
description annexin d1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14524: 46976-49250
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001619_030 0.0 - - annexin, putative [Ricinus communis]
2 Hb_002527_060 0.1361905925 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
3 Hb_005181_060 0.1558901066 - - ATP-citrate synthase, putative [Ricinus communis]
4 Hb_017559_010 0.169342163 - - hypothetical protein JCGZ_06093 [Jatropha curcas]
5 Hb_004330_080 0.1727747825 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 8 isoform X1 [Jatropha curcas]
6 Hb_078081_010 0.1772500615 - - hypothetical protein PRUPE_ppa015726mg [Prunus persica]
7 Hb_000590_070 0.1785565135 - - PREDICTED: beta-hexosaminidase 1 [Jatropha curcas]
8 Hb_000442_130 0.1801299924 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002739_040 0.1817915534 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
10 Hb_001863_200 0.1856485208 - - chloroplast 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Hevea brasiliensis]
11 Hb_000244_280 0.1907279136 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 isoform X1 [Jatropha curcas]
12 Hb_164926_040 0.1933093563 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
13 Hb_005485_070 0.1939180131 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
14 Hb_004958_020 0.1945355243 - - PREDICTED: uncharacterized protein LOC104609039 [Nelumbo nucifera]
15 Hb_003972_060 0.1964515225 - - PREDICTED: UDP-arabinopyranose mutase 3 [Populus euphratica]
16 Hb_003050_100 0.1977692761 - - PREDICTED: uncharacterized protein LOC105633987 [Jatropha curcas]
17 Hb_002687_020 0.1980345839 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000309_030 0.2000714361 - - PREDICTED: formate dehydrogenase, mitochondrial [Jatropha curcas]
19 Hb_030565_110 0.2002874857 - - PREDICTED: adenosylhomocysteinase 1 [Jatropha curcas]
20 Hb_000220_080 0.2007244284 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001619_030 Hb_001619_030 Hb_002527_060 Hb_002527_060 Hb_001619_030--Hb_002527_060 Hb_005181_060 Hb_005181_060 Hb_001619_030--Hb_005181_060 Hb_017559_010 Hb_017559_010 Hb_001619_030--Hb_017559_010 Hb_004330_080 Hb_004330_080 Hb_001619_030--Hb_004330_080 Hb_078081_010 Hb_078081_010 Hb_001619_030--Hb_078081_010 Hb_000590_070 Hb_000590_070 Hb_001619_030--Hb_000590_070 Hb_002527_060--Hb_005181_060 Hb_001894_010 Hb_001894_010 Hb_002527_060--Hb_001894_010 Hb_002527_060--Hb_000590_070 Hb_005485_070 Hb_005485_070 Hb_002527_060--Hb_005485_070 Hb_002739_040 Hb_002739_040 Hb_002527_060--Hb_002739_040 Hb_005181_060--Hb_000590_070 Hb_002026_070 Hb_002026_070 Hb_005181_060--Hb_002026_070 Hb_005181_060--Hb_001894_010 Hb_005181_060--Hb_005485_070 Hb_000473_030 Hb_000473_030 Hb_005181_060--Hb_000473_030 Hb_002603_010 Hb_002603_010 Hb_017559_010--Hb_002603_010 Hb_000574_370 Hb_000574_370 Hb_017559_010--Hb_000574_370 Hb_009193_060 Hb_009193_060 Hb_017559_010--Hb_009193_060 Hb_002093_050 Hb_002093_050 Hb_017559_010--Hb_002093_050 Hb_017559_010--Hb_000473_030 Hb_029510_100 Hb_029510_100 Hb_004330_080--Hb_029510_100 Hb_001014_190 Hb_001014_190 Hb_004330_080--Hb_001014_190 Hb_135757_020 Hb_135757_020 Hb_004330_080--Hb_135757_020 Hb_004094_020 Hb_004094_020 Hb_004330_080--Hb_004094_020 Hb_000029_440 Hb_000029_440 Hb_004330_080--Hb_000029_440 Hb_030565_110 Hb_030565_110 Hb_004330_080--Hb_030565_110 Hb_000186_290 Hb_000186_290 Hb_078081_010--Hb_000186_290 Hb_078081_010--Hb_002739_040 Hb_001040_200 Hb_001040_200 Hb_078081_010--Hb_001040_200 Hb_000834_040 Hb_000834_040 Hb_078081_010--Hb_000834_040 Hb_002307_010 Hb_002307_010 Hb_078081_010--Hb_002307_010 Hb_001663_120 Hb_001663_120 Hb_078081_010--Hb_001663_120 Hb_000116_240 Hb_000116_240 Hb_000590_070--Hb_000116_240 Hb_007317_020 Hb_007317_020 Hb_000590_070--Hb_007317_020 Hb_000309_030 Hb_000309_030 Hb_000590_070--Hb_000309_030 Hb_000590_070--Hb_005485_070 Hb_000120_740 Hb_000120_740 Hb_000590_070--Hb_000120_740
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
48.0864 47.8582 74.4284 193.036 20.7537 6.57096
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.3535 2.40854 11.5223 230.986 67.0381

CAGE analysis