Hb_078081_010

Information

Type -
Description -
Location Contig78081: 2237-2606
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015726mg
description hypothetical protein
nr
ID XP_007216172.1
description hypothetical protein PRUPE_ppa015726mg [Prunus persica]
swissprot
ID -
description -
trembl
ID M5WVV8
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015726mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 052_B12r.ab1: 2294-2872

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_078081_010 0.0 - - hypothetical protein PRUPE_ppa015726mg [Prunus persica]
2 Hb_000186_290 0.1165124085 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 8 isoform X1 [Jatropha curcas]
3 Hb_002739_040 0.1444903877 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
4 Hb_001040_200 0.1461662928 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
5 Hb_000834_040 0.1509201088 - - PREDICTED: ras-related protein Rab7 [Cucumis melo]
6 Hb_002307_010 0.1533393403 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
7 Hb_001663_120 0.1538943275 - - PREDICTED: formin-like protein 1 isoform X1 [Jatropha curcas]
8 Hb_000116_120 0.154298332 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
9 Hb_000127_080 0.1576168614 - - hypothetical protein POPTR_0005s21760g [Populus trichocarpa]
10 Hb_006501_100 0.1610876445 - - malic enzyme, putative [Ricinus communis]
11 Hb_004958_020 0.1612657761 - - PREDICTED: uncharacterized protein LOC104609039 [Nelumbo nucifera]
12 Hb_001564_090 0.1614935086 - - conserved hypothetical protein [Ricinus communis]
13 Hb_008566_080 0.1636595388 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
14 Hb_085315_010 0.1642464098 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
15 Hb_003092_050 0.1653935184 - - PREDICTED: putative chloride channel-like protein CLC-g [Jatropha curcas]
16 Hb_004282_010 0.1657813759 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
17 Hb_005181_060 0.166440496 - - ATP-citrate synthase, putative [Ricinus communis]
18 Hb_000112_050 0.1672090101 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]
19 Hb_002448_020 0.1674643138 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
20 Hb_001114_120 0.1698148906 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_078081_010 Hb_078081_010 Hb_000186_290 Hb_000186_290 Hb_078081_010--Hb_000186_290 Hb_002739_040 Hb_002739_040 Hb_078081_010--Hb_002739_040 Hb_001040_200 Hb_001040_200 Hb_078081_010--Hb_001040_200 Hb_000834_040 Hb_000834_040 Hb_078081_010--Hb_000834_040 Hb_002307_010 Hb_002307_010 Hb_078081_010--Hb_002307_010 Hb_001663_120 Hb_001663_120 Hb_078081_010--Hb_001663_120 Hb_000186_290--Hb_002739_040 Hb_164926_040 Hb_164926_040 Hb_000186_290--Hb_164926_040 Hb_000116_120 Hb_000116_120 Hb_000186_290--Hb_000116_120 Hb_004346_010 Hb_004346_010 Hb_000186_290--Hb_004346_010 Hb_021409_140 Hb_021409_140 Hb_000186_290--Hb_021409_140 Hb_000003_020 Hb_000003_020 Hb_002739_040--Hb_000003_020 Hb_004324_030 Hb_004324_030 Hb_002739_040--Hb_004324_030 Hb_003142_060 Hb_003142_060 Hb_002739_040--Hb_003142_060 Hb_004079_100 Hb_004079_100 Hb_002739_040--Hb_004079_100 Hb_026549_050 Hb_026549_050 Hb_002739_040--Hb_026549_050 Hb_002739_040--Hb_000834_040 Hb_000594_160 Hb_000594_160 Hb_001040_200--Hb_000594_160 Hb_022250_160 Hb_022250_160 Hb_001040_200--Hb_022250_160 Hb_007386_030 Hb_007386_030 Hb_001040_200--Hb_007386_030 Hb_004282_010 Hb_004282_010 Hb_001040_200--Hb_004282_010 Hb_001040_200--Hb_004079_100 Hb_002448_020 Hb_002448_020 Hb_001040_200--Hb_002448_020 Hb_000834_040--Hb_003142_060 Hb_003562_030 Hb_003562_030 Hb_000834_040--Hb_003562_030 Hb_000834_040--Hb_002307_010 Hb_000834_040--Hb_004324_030 Hb_042509_020 Hb_042509_020 Hb_000834_040--Hb_042509_020 Hb_000834_040--Hb_000003_020 Hb_001114_120 Hb_001114_120 Hb_002307_010--Hb_001114_120 Hb_001018_080 Hb_001018_080 Hb_002307_010--Hb_001018_080 Hb_011537_020 Hb_011537_020 Hb_002307_010--Hb_011537_020 Hb_000112_050 Hb_000112_050 Hb_002307_010--Hb_000112_050 Hb_003847_170 Hb_003847_170 Hb_002307_010--Hb_003847_170 Hb_001564_090 Hb_001564_090 Hb_001663_120--Hb_001564_090 Hb_029866_080 Hb_029866_080 Hb_001663_120--Hb_029866_080 Hb_085315_010 Hb_085315_010 Hb_001663_120--Hb_085315_010 Hb_004462_040 Hb_004462_040 Hb_001663_120--Hb_004462_040 Hb_164117_010 Hb_164117_010 Hb_001663_120--Hb_164117_010 Hb_005333_120 Hb_005333_120 Hb_001663_120--Hb_005333_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2249 74.1048 114.551 346.188 14.842 10.9826
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.8859 3.21187 0.343014 430.154 145.622

CAGE analysis