Hb_026549_050

Information

Type -
Description -
Location Contig26549: 36710-48444
Sequence    

Annotation

kegg
ID pop:POPTR_0006s23020g
description POPTRDRAFT_561511; hypothetical protein
nr
ID XP_012074865.1
description PREDICTED: uncharacterized protein LOC105636246 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KH60
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09014 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27742: 42119-42598 , PASA_asmbl_27743: 42860-48294
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026549_050 0.0 - - PREDICTED: uncharacterized protein LOC105636246 isoform X2 [Jatropha curcas]
2 Hb_000181_210 0.0880127687 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
3 Hb_001922_060 0.0918963157 - - ATP binding protein, putative [Ricinus communis]
4 Hb_004324_030 0.1055529885 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
5 Hb_000002_360 0.1231827163 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
6 Hb_000003_020 0.1281492604 - - PREDICTED: uncharacterized protein LOC105631161 [Jatropha curcas]
7 Hb_000832_280 0.1313214666 - - PREDICTED: aquaporin TIP1-3 [Jatropha curcas]
8 Hb_002739_040 0.1339333923 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
9 Hb_000540_040 0.1382869084 - - PREDICTED: chitinase 2 [Amborella trichopoda]
10 Hb_042509_020 0.1410559859 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
11 Hb_003142_060 0.1422268058 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
12 Hb_000216_050 0.1491326728 - - PREDICTED: indole-3-acetaldehyde oxidase-like [Jatropha curcas]
13 Hb_001054_090 0.1494902583 - - Potassium channel SKOR, putative [Ricinus communis]
14 Hb_000866_320 0.1554465065 - - receptor protein kinase, putative [Ricinus communis]
15 Hb_001159_170 0.1568309904 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
16 Hb_001287_060 0.1585128489 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
17 Hb_007625_030 0.1615390767 - - unknown [Medicago truncatula]
18 Hb_000056_350 0.164104917 - - PREDICTED: uncharacterized protein LOC105630437 [Jatropha curcas]
19 Hb_000567_180 0.1654547622 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.5 [Jatropha curcas]
20 Hb_080477_080 0.1656562185 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 isoform X1 [Gossypium raimondii]

Gene co-expression network

sample Hb_026549_050 Hb_026549_050 Hb_000181_210 Hb_000181_210 Hb_026549_050--Hb_000181_210 Hb_001922_060 Hb_001922_060 Hb_026549_050--Hb_001922_060 Hb_004324_030 Hb_004324_030 Hb_026549_050--Hb_004324_030 Hb_000002_360 Hb_000002_360 Hb_026549_050--Hb_000002_360 Hb_000003_020 Hb_000003_020 Hb_026549_050--Hb_000003_020 Hb_000832_280 Hb_000832_280 Hb_026549_050--Hb_000832_280 Hb_000181_210--Hb_000832_280 Hb_042509_020 Hb_042509_020 Hb_000181_210--Hb_042509_020 Hb_000181_210--Hb_004324_030 Hb_000181_210--Hb_001922_060 Hb_000056_350 Hb_000056_350 Hb_000181_210--Hb_000056_350 Hb_001922_060--Hb_000832_280 Hb_001922_060--Hb_000002_360 Hb_001922_060--Hb_004324_030 Hb_000567_180 Hb_000567_180 Hb_001922_060--Hb_000567_180 Hb_002739_040 Hb_002739_040 Hb_004324_030--Hb_002739_040 Hb_004324_030--Hb_042509_020 Hb_004324_030--Hb_000003_020 Hb_000216_050 Hb_000216_050 Hb_004324_030--Hb_000216_050 Hb_000002_360--Hb_000832_280 Hb_000866_320 Hb_000866_320 Hb_000002_360--Hb_000866_320 Hb_001433_160 Hb_001433_160 Hb_000002_360--Hb_001433_160 Hb_003387_050 Hb_003387_050 Hb_000002_360--Hb_003387_050 Hb_003142_060 Hb_003142_060 Hb_000003_020--Hb_003142_060 Hb_000003_020--Hb_002739_040 Hb_004079_100 Hb_004079_100 Hb_000003_020--Hb_004079_100 Hb_000085_380 Hb_000085_380 Hb_000003_020--Hb_000085_380 Hb_003106_230 Hb_003106_230 Hb_000003_020--Hb_003106_230 Hb_001287_060 Hb_001287_060 Hb_000832_280--Hb_001287_060 Hb_000832_280--Hb_000056_350 Hb_000832_280--Hb_004324_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.747618 10.5874 6.235 19.1976 0.127604 0.193265
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.791224 3.09499 0.579843 15.3023 5.84191

CAGE analysis