Hb_042509_020

Information

Type -
Description -
Location Contig42509: 23713-29245
Sequence    

Annotation

kegg
ID pop:POPTR_0001s39270g
description hypothetical protein
nr
ID KDP27663.1
description hypothetical protein JCGZ_19555 [Jatropha curcas]
swissprot
ID Q9SYM1
description Mechanosensitive ion channel protein 6 OS=Arabidopsis thaliana GN=MSL6 PE=1 SV=1
trembl
ID A0A067JXY6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19555 PE=4 SV=1
Gene Ontology
ID GO:0016020
description mechanosensitive ion channel protein 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42002: 25399-26504 , PASA_asmbl_42003: 27622-27807
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_042509_020 0.0 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
2 Hb_000181_210 0.1027287571 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
3 Hb_004324_030 0.1028647763 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
4 Hb_000834_040 0.1334173932 - - PREDICTED: ras-related protein Rab7 [Cucumis melo]
5 Hb_000832_280 0.1400935186 - - PREDICTED: aquaporin TIP1-3 [Jatropha curcas]
6 Hb_026549_050 0.1410559859 - - PREDICTED: uncharacterized protein LOC105636246 isoform X2 [Jatropha curcas]
7 Hb_001159_170 0.1476303486 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
8 Hb_007138_030 0.1501165797 - - PREDICTED: putative disease resistance protein At4g11170 [Jatropha curcas]
9 Hb_080477_080 0.1503173575 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 isoform X1 [Gossypium raimondii]
10 Hb_002739_040 0.1518250061 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
11 Hb_032225_030 0.1526128881 - - PREDICTED: leucine-rich repeat extensin-like protein 2 [Jatropha curcas]
12 Hb_001287_060 0.1571056532 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
13 Hb_000540_040 0.1603490559 - - PREDICTED: chitinase 2 [Amborella trichopoda]
14 Hb_000003_020 0.1611737841 - - PREDICTED: uncharacterized protein LOC105631161 [Jatropha curcas]
15 Hb_009545_030 0.1637779399 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
16 Hb_002026_080 0.1655632752 desease resistance Gene Name: TIR_2 nucleoside-triphosphatase, putative [Ricinus communis]
17 Hb_001922_060 0.1692395932 - - ATP binding protein, putative [Ricinus communis]
18 Hb_003142_060 0.170741816 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
19 Hb_006816_420 0.1720151409 - - hypothetical protein JCGZ_23261 [Jatropha curcas]
20 Hb_003562_030 0.1759036969 - - -

Gene co-expression network

sample Hb_042509_020 Hb_042509_020 Hb_000181_210 Hb_000181_210 Hb_042509_020--Hb_000181_210 Hb_004324_030 Hb_004324_030 Hb_042509_020--Hb_004324_030 Hb_000834_040 Hb_000834_040 Hb_042509_020--Hb_000834_040 Hb_000832_280 Hb_000832_280 Hb_042509_020--Hb_000832_280 Hb_026549_050 Hb_026549_050 Hb_042509_020--Hb_026549_050 Hb_001159_170 Hb_001159_170 Hb_042509_020--Hb_001159_170 Hb_000181_210--Hb_026549_050 Hb_000181_210--Hb_000832_280 Hb_000181_210--Hb_004324_030 Hb_001922_060 Hb_001922_060 Hb_000181_210--Hb_001922_060 Hb_000056_350 Hb_000056_350 Hb_000181_210--Hb_000056_350 Hb_002739_040 Hb_002739_040 Hb_004324_030--Hb_002739_040 Hb_004324_030--Hb_026549_050 Hb_000003_020 Hb_000003_020 Hb_004324_030--Hb_000003_020 Hb_000216_050 Hb_000216_050 Hb_004324_030--Hb_000216_050 Hb_003142_060 Hb_003142_060 Hb_000834_040--Hb_003142_060 Hb_003562_030 Hb_003562_030 Hb_000834_040--Hb_003562_030 Hb_002307_010 Hb_002307_010 Hb_000834_040--Hb_002307_010 Hb_000834_040--Hb_004324_030 Hb_000834_040--Hb_000003_020 Hb_001287_060 Hb_001287_060 Hb_000832_280--Hb_001287_060 Hb_000832_280--Hb_000056_350 Hb_000832_280--Hb_004324_030 Hb_000002_360 Hb_000002_360 Hb_000832_280--Hb_000002_360 Hb_000832_280--Hb_026549_050 Hb_026549_050--Hb_001922_060 Hb_026549_050--Hb_000002_360 Hb_026549_050--Hb_000003_020 Hb_000970_020 Hb_000970_020 Hb_001159_170--Hb_000970_020 Hb_001159_170--Hb_004324_030 Hb_007416_290 Hb_007416_290 Hb_001159_170--Hb_007416_290 Hb_000959_120 Hb_000959_120 Hb_001159_170--Hb_000959_120 Hb_009545_030 Hb_009545_030 Hb_001159_170--Hb_009545_030 Hb_007134_030 Hb_007134_030 Hb_001159_170--Hb_007134_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.162883 1.45464 0.89136 3.80108 0.0108164 0.0212957
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.379913 0.237114 0.355518 3.84972 1.0796

CAGE analysis