Hb_000970_020

Information

Type -
Description -
Location Contig970: 22403-28672
Sequence    

Annotation

kegg
ID tcc:TCM_000790
description Voltage dependent anion channel 2
nr
ID XP_006383551.1
description hypothetical protein POPTR_0005s19050g [Populus trichocarpa]
swissprot
ID Q9FJX3
description Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=VDAC2 PE=1 SV=1
trembl
ID U5GCS0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s19050g PE=4 SV=1
Gene Ontology
ID GO:0005741
description mitochondrial outer membrane protein porin 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000970_020 0.0 - - hypothetical protein POPTR_0005s19050g [Populus trichocarpa]
2 Hb_001159_170 0.0992846125 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
3 Hb_000959_120 0.1328547615 - - PREDICTED: protein BRASSINOSTEROID INSENSITIVE 1 [Jatropha curcas]
4 Hb_002814_050 0.1331397723 - - PREDICTED: sugar carrier protein A [Jatropha curcas]
5 Hb_003640_010 0.1368065279 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
6 Hb_002518_180 0.1386644387 - - hypothetical protein POPTR_0001s25460g [Populus trichocarpa]
7 Hb_007416_290 0.1394616526 - - PREDICTED: plasma membrane ATPase 4-like [Pyrus x bretschneideri]
8 Hb_007134_030 0.1406346681 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
9 Hb_013848_030 0.1452183123 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
10 Hb_000120_880 0.1467967139 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
11 Hb_002448_020 0.1508019417 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
12 Hb_187959_010 0.1513626801 - - hypothetical protein JCGZ_12266 [Jatropha curcas]
13 Hb_000155_040 0.1544020158 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
14 Hb_009545_030 0.1549025401 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
15 Hb_000095_070 0.1552364176 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007590_100 0.1584159087 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
17 Hb_000313_230 0.1614295763 - - PREDICTED: uncharacterized protein LOC105636893 [Jatropha curcas]
18 Hb_000465_450 0.161691202 - - triacylglycerol lipase, putative [Ricinus communis]
19 Hb_003092_050 0.164123384 - - PREDICTED: putative chloride channel-like protein CLC-g [Jatropha curcas]
20 Hb_078361_010 0.1673153405 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000970_020 Hb_000970_020 Hb_001159_170 Hb_001159_170 Hb_000970_020--Hb_001159_170 Hb_000959_120 Hb_000959_120 Hb_000970_020--Hb_000959_120 Hb_002814_050 Hb_002814_050 Hb_000970_020--Hb_002814_050 Hb_003640_010 Hb_003640_010 Hb_000970_020--Hb_003640_010 Hb_002518_180 Hb_002518_180 Hb_000970_020--Hb_002518_180 Hb_007416_290 Hb_007416_290 Hb_000970_020--Hb_007416_290 Hb_004324_030 Hb_004324_030 Hb_001159_170--Hb_004324_030 Hb_001159_170--Hb_007416_290 Hb_001159_170--Hb_000959_120 Hb_009545_030 Hb_009545_030 Hb_001159_170--Hb_009545_030 Hb_007134_030 Hb_007134_030 Hb_001159_170--Hb_007134_030 Hb_000095_070 Hb_000095_070 Hb_000959_120--Hb_000095_070 Hb_001247_270 Hb_001247_270 Hb_000959_120--Hb_001247_270 Hb_000979_160 Hb_000979_160 Hb_000959_120--Hb_000979_160 Hb_001728_130 Hb_001728_130 Hb_000959_120--Hb_001728_130 Hb_001976_020 Hb_001976_020 Hb_000959_120--Hb_001976_020 Hb_004462_030 Hb_004462_030 Hb_000959_120--Hb_004462_030 Hb_002814_050--Hb_000095_070 Hb_000347_420 Hb_000347_420 Hb_002814_050--Hb_000347_420 Hb_004307_070 Hb_004307_070 Hb_002814_050--Hb_004307_070 Hb_007943_020 Hb_007943_020 Hb_002814_050--Hb_007943_020 Hb_116194_010 Hb_116194_010 Hb_002814_050--Hb_116194_010 Hb_013848_030 Hb_013848_030 Hb_003640_010--Hb_013848_030 Hb_000120_880 Hb_000120_880 Hb_003640_010--Hb_000120_880 Hb_003085_080 Hb_003085_080 Hb_003640_010--Hb_003085_080 Hb_000445_030 Hb_000445_030 Hb_003640_010--Hb_000445_030 Hb_002448_020 Hb_002448_020 Hb_003640_010--Hb_002448_020 Hb_002622_010 Hb_002622_010 Hb_003640_010--Hb_002622_010 Hb_033594_100 Hb_033594_100 Hb_002518_180--Hb_033594_100 Hb_009535_030 Hb_009535_030 Hb_002518_180--Hb_009535_030 Hb_004007_200 Hb_004007_200 Hb_002518_180--Hb_004007_200 Hb_187959_010 Hb_187959_010 Hb_002518_180--Hb_187959_010 Hb_098533_010 Hb_098533_010 Hb_002518_180--Hb_098533_010 Hb_022250_160 Hb_022250_160 Hb_007416_290--Hb_022250_160 Hb_008143_040 Hb_008143_040 Hb_007416_290--Hb_008143_040 Hb_007416_290--Hb_009545_030 Hb_007416_290--Hb_007134_030 Hb_004079_100 Hb_004079_100 Hb_007416_290--Hb_004079_100 Hb_000946_070 Hb_000946_070 Hb_007416_290--Hb_000946_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.032193 1.5758 0.991708 4.54002 0 0.0903972
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0903235 0.230975 0.370611 4.42497 3.34179

CAGE analysis