Hb_002518_180

Information

Type -
Description -
Location Contig2518: 178566-185024
Sequence    

Annotation

kegg
ID pop:POPTR_0001s25460g
description POPTRDRAFT_641114; hypothetical protein
nr
ID XP_002299834.2
description hypothetical protein POPTR_0001s25460g [Populus trichocarpa]
swissprot
ID Q304B9
description Neutral ceramidase OS=Arabidopsis thaliana GN=At2g38010 PE=3 SV=1
trembl
ID B9GIW2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s25460g PE=4 SV=1
Gene Ontology
ID GO:0005576
description neutral ceramidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26286: 178660-184891 , PASA_asmbl_26287: 178597-184891
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002518_180 0.0 - - hypothetical protein POPTR_0001s25460g [Populus trichocarpa]
2 Hb_033594_100 0.1242402201 transcription factor TF Family: GNAT PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_009535_030 0.1321977404 - - CP2 [Hevea brasiliensis]
4 Hb_004007_200 0.1332470359 - - PREDICTED: BTB/POZ domain-containing protein NPY5 [Jatropha curcas]
5 Hb_187959_010 0.1355535397 - - hypothetical protein JCGZ_12266 [Jatropha curcas]
6 Hb_000970_020 0.1386644387 - - hypothetical protein POPTR_0005s19050g [Populus trichocarpa]
7 Hb_098533_010 0.1407005733 - - hypothetical protein L484_003492 [Morus notabilis]
8 Hb_001054_060 0.1422228993 - - PREDICTED: dihydropyrimidine dehydrogenase [NADP(+)] [Jatropha curcas]
9 Hb_003030_010 0.1431779264 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
10 Hb_030312_030 0.1448410302 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
11 Hb_001310_050 0.1448488834 - - PREDICTED: formin-like protein 6 [Jatropha curcas]
12 Hb_029584_100 0.1477469319 - - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [Gossypium arboreum]
13 Hb_000313_230 0.1484716466 - - PREDICTED: uncharacterized protein LOC105636893 [Jatropha curcas]
14 Hb_009803_020 0.1489963076 - - hypothetical protein PRUPE_ppa006317mg [Prunus persica]
15 Hb_000959_120 0.1502845603 - - PREDICTED: protein BRASSINOSTEROID INSENSITIVE 1 [Jatropha curcas]
16 Hb_000875_070 0.1521324544 - - -
17 Hb_011853_010 0.1551700024 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
18 Hb_000337_010 0.1583905815 - - PREDICTED: proteasome activator subunit 4 isoform X2 [Jatropha curcas]
19 Hb_006185_030 0.1587203257 - - threonine synthase, putative [Ricinus communis]
20 Hb_001235_130 0.1591307132 - - -

Gene co-expression network

sample Hb_002518_180 Hb_002518_180 Hb_033594_100 Hb_033594_100 Hb_002518_180--Hb_033594_100 Hb_009535_030 Hb_009535_030 Hb_002518_180--Hb_009535_030 Hb_004007_200 Hb_004007_200 Hb_002518_180--Hb_004007_200 Hb_187959_010 Hb_187959_010 Hb_002518_180--Hb_187959_010 Hb_000970_020 Hb_000970_020 Hb_002518_180--Hb_000970_020 Hb_098533_010 Hb_098533_010 Hb_002518_180--Hb_098533_010 Hb_011853_010 Hb_011853_010 Hb_033594_100--Hb_011853_010 Hb_001040_150 Hb_001040_150 Hb_033594_100--Hb_001040_150 Hb_001677_230 Hb_001677_230 Hb_033594_100--Hb_001677_230 Hb_101449_010 Hb_101449_010 Hb_033594_100--Hb_101449_010 Hb_082683_010 Hb_082683_010 Hb_033594_100--Hb_082683_010 Hb_029584_100 Hb_029584_100 Hb_009535_030--Hb_029584_100 Hb_004030_060 Hb_004030_060 Hb_009535_030--Hb_004030_060 Hb_001235_130 Hb_001235_130 Hb_009535_030--Hb_001235_130 Hb_001247_270 Hb_001247_270 Hb_009535_030--Hb_001247_270 Hb_007229_050 Hb_007229_050 Hb_009535_030--Hb_007229_050 Hb_001473_170 Hb_001473_170 Hb_009535_030--Hb_001473_170 Hb_000386_050 Hb_000386_050 Hb_004007_200--Hb_000386_050 Hb_004007_200--Hb_187959_010 Hb_001054_060 Hb_001054_060 Hb_004007_200--Hb_001054_060 Hb_000800_010 Hb_000800_010 Hb_004007_200--Hb_000800_010 Hb_006414_010 Hb_006414_010 Hb_004007_200--Hb_006414_010 Hb_003030_010 Hb_003030_010 Hb_187959_010--Hb_003030_010 Hb_187959_010--Hb_001054_060 Hb_007590_100 Hb_007590_100 Hb_187959_010--Hb_007590_100 Hb_187959_010--Hb_006414_010 Hb_007134_030 Hb_007134_030 Hb_187959_010--Hb_007134_030 Hb_001159_170 Hb_001159_170 Hb_000970_020--Hb_001159_170 Hb_000959_120 Hb_000959_120 Hb_000970_020--Hb_000959_120 Hb_002814_050 Hb_002814_050 Hb_000970_020--Hb_002814_050 Hb_003640_010 Hb_003640_010 Hb_000970_020--Hb_003640_010 Hb_007416_290 Hb_007416_290 Hb_000970_020--Hb_007416_290 Hb_009803_020 Hb_009803_020 Hb_098533_010--Hb_009803_020 Hb_098533_010--Hb_007229_050 Hb_007317_020 Hb_007317_020 Hb_098533_010--Hb_007317_020 Hb_006185_030 Hb_006185_030 Hb_098533_010--Hb_006185_030 Hb_098533_010--Hb_001473_170 Hb_098533_010--Hb_009535_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.05655 14.3065 7.78437 30.5976 1.6563 2.33354
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.40787 2.8535 4.48849 35.2661 38.5587

CAGE analysis