Hb_002814_050

Information

Type -
Description -
Location Contig2814: 95522-98382
Sequence    

Annotation

kegg
ID rcu:RCOM_0701570
description sugar transporter, putative (EC:1.3.1.74)
nr
ID XP_012071435.1
description PREDICTED: sugar carrier protein A [Jatropha curcas]
swissprot
ID Q10710
description Sugar carrier protein A OS=Ricinus communis GN=STA PE=2 SV=1
trembl
ID A0A067L2B1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03978 PE=3 SV=1
Gene Ontology
ID GO:0016021
description sugar transporter protein 7 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29460: 95724-98972
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002814_050 0.0 - - PREDICTED: sugar carrier protein A [Jatropha curcas]
2 Hb_000095_070 0.0978976318 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000347_420 0.119065037 - - hypothetical protein JCGZ_24696 [Jatropha curcas]
4 Hb_004307_070 0.1222618608 - - kinase, putative [Ricinus communis]
5 Hb_007943_020 0.1259794799 - - transcription factor, putative [Ricinus communis]
6 Hb_116194_010 0.1322604203 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
7 Hb_000970_020 0.1331397723 - - hypothetical protein POPTR_0005s19050g [Populus trichocarpa]
8 Hb_002888_050 0.1389482554 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
9 Hb_000959_120 0.1405884862 - - PREDICTED: protein BRASSINOSTEROID INSENSITIVE 1 [Jatropha curcas]
10 Hb_002042_160 0.1415962338 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
11 Hb_006355_070 0.144878484 transcription factor TF Family: bHLH Phytochrome-interacting factor, putative [Ricinus communis]
12 Hb_000155_040 0.1474131301 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
13 Hb_002420_010 0.1476321668 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
14 Hb_003226_030 0.1481316588 - - sucrose synthase 5 [Hevea brasiliensis]
15 Hb_000994_100 0.1501502306 - - RALFL33, putative [Ricinus communis]
16 Hb_002308_060 0.15106531 - - PREDICTED: cytochrome P450 704C1-like [Jatropha curcas]
17 Hb_060198_010 0.1533646676 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
18 Hb_001607_070 0.1534087983 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
19 Hb_078361_010 0.1539153548 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
20 Hb_001143_140 0.1550661985 - - Aldehyde dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002814_050 Hb_002814_050 Hb_000095_070 Hb_000095_070 Hb_002814_050--Hb_000095_070 Hb_000347_420 Hb_000347_420 Hb_002814_050--Hb_000347_420 Hb_004307_070 Hb_004307_070 Hb_002814_050--Hb_004307_070 Hb_007943_020 Hb_007943_020 Hb_002814_050--Hb_007943_020 Hb_116194_010 Hb_116194_010 Hb_002814_050--Hb_116194_010 Hb_000970_020 Hb_000970_020 Hb_002814_050--Hb_000970_020 Hb_060198_010 Hb_060198_010 Hb_000095_070--Hb_060198_010 Hb_000095_070--Hb_000347_420 Hb_001728_130 Hb_001728_130 Hb_000095_070--Hb_001728_130 Hb_000959_120 Hb_000959_120 Hb_000095_070--Hb_000959_120 Hb_000095_070--Hb_004307_070 Hb_000347_420--Hb_007943_020 Hb_029260_010 Hb_029260_010 Hb_000347_420--Hb_029260_010 Hb_000347_420--Hb_004307_070 Hb_138606_020 Hb_138606_020 Hb_000347_420--Hb_138606_020 Hb_000994_100 Hb_000994_100 Hb_000347_420--Hb_000994_100 Hb_001143_140 Hb_001143_140 Hb_004307_070--Hb_001143_140 Hb_006355_070 Hb_006355_070 Hb_004307_070--Hb_006355_070 Hb_009641_040 Hb_009641_040 Hb_004307_070--Hb_009641_040 Hb_004307_070--Hb_000994_100 Hb_003226_030 Hb_003226_030 Hb_007943_020--Hb_003226_030 Hb_007943_020--Hb_029260_010 Hb_000020_030 Hb_000020_030 Hb_007943_020--Hb_000020_030 Hb_002042_160 Hb_002042_160 Hb_007943_020--Hb_002042_160 Hb_007943_020--Hb_138606_020 Hb_032260_130 Hb_032260_130 Hb_116194_010--Hb_032260_130 Hb_000115_290 Hb_000115_290 Hb_116194_010--Hb_000115_290 Hb_164117_010 Hb_164117_010 Hb_116194_010--Hb_164117_010 Hb_116194_010--Hb_002042_160 Hb_004785_090 Hb_004785_090 Hb_116194_010--Hb_004785_090 Hb_001159_170 Hb_001159_170 Hb_000970_020--Hb_001159_170 Hb_000970_020--Hb_000959_120 Hb_003640_010 Hb_003640_010 Hb_000970_020--Hb_003640_010 Hb_002518_180 Hb_002518_180 Hb_000970_020--Hb_002518_180 Hb_007416_290 Hb_007416_290 Hb_000970_020--Hb_007416_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.096799 6.59549 1.32346 11.8627 0.0519218 0.351084
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0601931 0.094727 0.300196 11.2513 9.63763

CAGE analysis