Hb_000020_030

Information

Type -
Description -
Location Contig20: 43217-44038
Sequence    

Annotation

kegg
ID rcu:RCOM_1266100
description protein binding protein, putative
nr
ID XP_002530545.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SX26
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1266100 PE=4 SV=1
Gene Ontology
ID GO:0006820
description protein binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000020_030 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_007943_020 0.1002651911 - - transcription factor, putative [Ricinus communis]
3 Hb_002970_070 0.1150832927 - - multidrug/pheromone exporter protein [Hevea brasiliensis]
4 Hb_002042_160 0.115474565 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
5 Hb_022501_020 0.1164926091 - - AMP dependent CoA ligase, putative [Ricinus communis]
6 Hb_003226_030 0.1243578744 - - sucrose synthase 5 [Hevea brasiliensis]
7 Hb_005357_020 0.1281121801 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000540_040 0.1298912858 - - PREDICTED: chitinase 2 [Amborella trichopoda]
9 Hb_006364_020 0.1321342956 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
10 Hb_012743_020 0.1322855842 - - serine/threonine protein phosphatase, putative [Ricinus communis]
11 Hb_130967_010 0.132665275 - - UDP-glucosyltransferase, putative [Ricinus communis]
12 Hb_025432_010 0.1348812607 - - hypothetical protein JCGZ_21627 [Jatropha curcas]
13 Hb_000994_100 0.1359388682 - - RALFL33, putative [Ricinus communis]
14 Hb_000793_040 0.1387444088 - - PREDICTED: transcription factor LHW [Jatropha curcas]
15 Hb_029260_010 0.1404803965 - - nitrate transporter, putative [Ricinus communis]
16 Hb_038777_010 0.1426701345 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN2 isoform X1 [Populus euphratica]
17 Hb_003788_010 0.1432325731 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
18 Hb_078361_010 0.1436005472 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
19 Hb_000028_460 0.1436279725 - - hypothetical protein POPTR_0015s05340g [Populus trichocarpa]
20 Hb_000347_420 0.1454619732 - - hypothetical protein JCGZ_24696 [Jatropha curcas]

Gene co-expression network

sample Hb_000020_030 Hb_000020_030 Hb_007943_020 Hb_007943_020 Hb_000020_030--Hb_007943_020 Hb_002970_070 Hb_002970_070 Hb_000020_030--Hb_002970_070 Hb_002042_160 Hb_002042_160 Hb_000020_030--Hb_002042_160 Hb_022501_020 Hb_022501_020 Hb_000020_030--Hb_022501_020 Hb_003226_030 Hb_003226_030 Hb_000020_030--Hb_003226_030 Hb_005357_020 Hb_005357_020 Hb_000020_030--Hb_005357_020 Hb_000347_420 Hb_000347_420 Hb_007943_020--Hb_000347_420 Hb_007943_020--Hb_003226_030 Hb_029260_010 Hb_029260_010 Hb_007943_020--Hb_029260_010 Hb_007943_020--Hb_002042_160 Hb_138606_020 Hb_138606_020 Hb_007943_020--Hb_138606_020 Hb_000994_100 Hb_000994_100 Hb_002970_070--Hb_000994_100 Hb_002970_070--Hb_002042_160 Hb_055529_010 Hb_055529_010 Hb_002970_070--Hb_055529_010 Hb_010417_090 Hb_010417_090 Hb_002970_070--Hb_010417_090 Hb_130967_010 Hb_130967_010 Hb_002970_070--Hb_130967_010 Hb_002042_160--Hb_000994_100 Hb_172633_020 Hb_172633_020 Hb_002042_160--Hb_172633_020 Hb_184942_010 Hb_184942_010 Hb_002042_160--Hb_184942_010 Hb_002042_160--Hb_055529_010 Hb_150084_010 Hb_150084_010 Hb_002042_160--Hb_150084_010 Hb_006241_010 Hb_006241_010 Hb_022501_020--Hb_006241_010 Hb_012807_060 Hb_012807_060 Hb_022501_020--Hb_012807_060 Hb_003453_030 Hb_003453_030 Hb_022501_020--Hb_003453_030 Hb_002551_090 Hb_002551_090 Hb_022501_020--Hb_002551_090 Hb_004044_030 Hb_004044_030 Hb_022501_020--Hb_004044_030 Hb_006594_060 Hb_006594_060 Hb_022501_020--Hb_006594_060 Hb_012743_020 Hb_012743_020 Hb_003226_030--Hb_012743_020 Hb_002000_130 Hb_002000_130 Hb_003226_030--Hb_002000_130 Hb_001143_140 Hb_001143_140 Hb_003226_030--Hb_001143_140 Hb_003226_030--Hb_005357_020 Hb_008092_020 Hb_008092_020 Hb_003226_030--Hb_008092_020 Hb_005357_020--Hb_012743_020 Hb_010417_100 Hb_010417_100 Hb_005357_020--Hb_010417_100 Hb_038777_010 Hb_038777_010 Hb_005357_020--Hb_038777_010 Hb_000589_240 Hb_000589_240 Hb_005357_020--Hb_000589_240 Hb_005357_020--Hb_138606_020 Hb_005357_020--Hb_029260_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.532055 12.6799 2.88319 15.4447 0.138414 0.219247
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.195332 0.25599 0.185676 16.0042 5.97672

CAGE analysis